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Adds a recommended is_lab_host column to the ingested metadata.tsv file #68

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merged 1 commit into from
Oct 9, 2024

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@j23414 j23414 commented Oct 9, 2024

Description of proposed changes

Enables filtering out lab-host strains to focus on real-time genomic surveillance strains. I've needed to filter out PAT and other lab-host strains in

I'm adding the is_lab_host column to the pathogen-repo-guide since we usually want to be able to filter these out of real-time phylogenetic trees, and so I may one-day stop forgetting to add this column...

Related issue(s)

Resolves #60

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Thanks!

@j23414 j23414 merged commit 22e8458 into main Oct 9, 2024
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@j23414 j23414 deleted the is-lab-host branch October 9, 2024 22:52
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ingest: Add lab host fields from NCBI Datasets
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