Drop nextclade segment separation since that process is moved to ingest

nextstrain · Jul 29, 2024 · 39b1a28 · 39b1a28
1 parent 75dc345
commit 39b1a28
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diff --git a/phylogenetic/Snakefile b/phylogenetic/Snakefile
@@ -18,7 +18,6 @@ rule all:
         auspice_tree = expand("auspice/lassa_{segment}.json", segment=segments)
 
 include: "rules/prepare_sequences.smk"
-include: "rules/prepare_sequences_segments.smk"
 include: "rules/construct_phylogeny.smk"
 include: "rules/annotate_phylogeny.smk"
 include: "rules/export.smk"

diff --git a/phylogenetic/rules/prepare_sequences_segments.smk b/phylogenetic/rules/prepare_sequences_segments.smk