Merge pull request #16 from neutrons/finddata_conda #59
Workflow file for this run
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| name: testing | |
| on: | |
| workflow_dispatch: | |
| pull_request: | |
| push: | |
| branches: [next, qa, main] | |
| tags: ['v*'] | |
| jobs: | |
| linux: | |
| runs-on: ubuntu-latest | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| auto-update-conda: true | |
| channels: mantid/label/main,conda-forge,defaults | |
| mamba-version: "*" | |
| environment-file: environment.yml | |
| cache-environment-key: ${{ runner.os }}-env-${{ hashFiles('**/environment.yml') }} | |
| cache-downloads-key: ${{ runner.os }}-downloads-${{ hashFiles('**/environment.yml') }} | |
| - name: install additional dependencies | |
| run: | | |
| echo "installing additional dependencies if cannot be installed from conda" | |
| - name: run unit tests | |
| run: | | |
| echo "running unit tests" | |
| python -m pytest -vv -m "not datarepo and not sns_mounted" --cov=src --cov-report=xml --cov-report=term-missing tests/ | |
| mv .coverage .coverage.unit | |
| - name: run integration tests | |
| run: | | |
| echo "running integration tests" | |
| echo "CURRENT DIRECTORY" | |
| pwd | |
| ls | |
| git submodule update --init | |
| #echo "CONTENTS OF ./test/mr_reduction-data" | |
| #ls /home/runner/work/MagnetismReflectometer/MagnetismReflectometer/test/mr_reduction-data | |
| #echo "SHA in parent repo:" | |
| #git ls-tree $(git branch --show-current) tests/mr_reduction-data | |
| #echo "SHA in submodule:" | |
| #git submodule status tests/mr_reduction-data | |
| python -m pytest -vv -m "datarepo" --cov=src --cov-report=xml --cov-report=term-missing tests/ | |
| mv .coverage .coverage.integration | |
| - name: combine coverage reports | |
| run: | | |
| coverage combine # merge all .coverage.* files into .coverage | |
| - name: upload coverage to codecov | |
| uses: codecov/codecov-action@v4 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| - name: build conda package | |
| run: | | |
| # set up environment | |
| cd conda.recipe | |
| echo "versioningit $(versioningit ../)" | |
| # conda channels could have been defined in the conda-incubator, but you can copy/paste the lines | |
| # below to build the conda package in your local machine | |
| CHANNELS="--channel mantid/label/main --channel conda-forge --channel oncat --channel neutrons" | |
| VERSION=$(versioningit ../) conda mambabuild $CHANNELS --output-folder . . | |
| conda verify noarch/mr_reduction*.tar.bz2 |