Outlier detection and robust estimation #64
Workflow file for this run
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| name: CI | |
| on: | |
| push: | |
| branches: [ "master" ] | |
| pull_request: | |
| branches: [ "master" ] | |
| workflow_dispatch: | |
| jobs: | |
| linter-check: | |
| name: Lint code | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| with: | |
| # Full git history is needed to get a proper | |
| # list of changed files within `super-linter` | |
| fetch-depth: 0 | |
| - name: Lint code | |
| uses: super-linter/super-linter/[email protected] | |
| env: | |
| LINTER_RULES_PATH: . | |
| DEFAULT_BRANCH: master | |
| VALIDATE_ALL_CODEBASE: false | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| FILTER_REGEX_INCLUDE: ^(pymultifracs|tests)/.*\.py$ | |
| PYTHON_PYLINT_CONFIG_FILE: .pylintrc | |
| VALIDATE_PYTHON_FLAKE8: true | |
| VALIDATE_PYTHON_PYLINT: true | |
| test-suite: | |
| defaults: | |
| run: | |
| shell: bash -el {0} | |
| runs-on: ${{ matrix.os }} | |
| needs: linter-check | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu-latest] | |
| python-version: ["3.10", "3.11", "3.12", "3.13"] | |
| include: | |
| - os: windows-latest | |
| python-version: "3.10" | |
| - os: macos-latest | |
| python-version: "3.10" | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Get Date | |
| id: get-date | |
| run: echo "today=$(/bin/date -u '+%Y%m%d')" >> $GITHUB_OUTPUT | |
| shell: bash | |
| # - name: Cache conda | |
| # uses: actions/cache@v2 | |
| # env: | |
| # CACHE_NUMBER: 0 | |
| # with: | |
| # path: ~/conda_pkgs_dir | |
| # key: | |
| # ${{ runner.os }}-conda-${{ env.CACHE_NUMBER }}-${{ | |
| # hashFiles('env.yml') }} | |
| - name: Setup python ${{ matrix.python-version }} with mamba | |
| uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| # installer-url: https://github.com/conda-forge/miniforge/releases/download/24.11.3-0/Miniforge3-24.11.3-0-Linux-x86_64.sh | |
| miniforge-version: latest | |
| environment-file: meta.yml | |
| channels: conda-forge,numba | |
| channel-priority: flexible | |
| activate-environment: pymultifracs | |
| # mamba-version: "*" | |
| use-only-tar-bz2: true | |
| - name: Testing | |
| run: | | |
| mamba list | |
| mamba install -c numba -c conda-forge numpy scipy pywavelets seaborn numba statsmodels pytest pytest-xdist pytest-cov tqdm joblib | |
| pip install -e .[bootstrap,robust,test] | |
| mamba list | |
| pytest -n auto -x --cov=./ --cov-report=xml | |
| - name: Upload coverage | |
| # if: ${{ github.event_name == 'push' && matrix.os == 'ubuntu-latest' && matrix.python-version == '3.13' }} | |
| if: ${{ matrix.os == 'ubuntu-latest' && matrix.python-version == '3.13' }} | |
| uses: codecov/codecov-action@v5 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| files: ./coverage.xml # optional | |
| name: codecov-umbrella # optional | |
| fail_ci_if_error: false # optional (default = false) | |
| verbose: true # optional (default = false) |