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Merge pull request #114 from neuropsychology/dev
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0.5.0 (remove tons of features)
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DominiqueMakowski authored Feb 6, 2020
2 parents 611e984 + d7a02f9 commit f3b614c
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35 changes: 11 additions & 24 deletions DESCRIPTION
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@@ -1,7 +1,7 @@
Package: psycho
Type: Package
Title: Efficient and Publishing-Oriented Workflow for Psychological Science
Version: 0.4.0
Version: 0.5.0
Authors@R: c(
person("Dominique",
"Makowski",
Expand All @@ -28,36 +28,23 @@ Description: The main goal of the psycho package is to provide tools for psychol
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
RoxygenNote: 6.1.1
RoxygenNote: 7.0.2
Depends:
R (>= 3.5.0)
Imports:
methods,
stats,
scales,
utils,
dplyr,
ggplot2,
tidyr,
stringr,
purrr,
psych,
MASS,
qgraph,
nFactors,
ppcor,
ggcorrplot,
rstanarm,
rstantools,
MuMIn,
lme4,
lmerTest,
emmeans (>= 1.2.2),
broom,
tibble,
DescTools,
BayesFactor (>= 0.9.1),
scales,
loo (>= 2.0.0),
lavaan,
blavaan (>= 0.3.4)
ggplot2,
insight,
bayestestR,
parameters,
performance,
effectsize
Suggests:
knitr,
rmarkdown,
Expand Down
2 changes: 1 addition & 1 deletion LICENSE
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YEAR: 2018
YEAR: 2019
COPYRIGHT HOLDER: Dominique Makowski <[email protected]>
200 changes: 0 additions & 200 deletions NAMESPACE
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# Generated by roxygen2: do not edit by hand

S3method(analyze,anova)
S3method(analyze,aov)
S3method(analyze,aovlist)
S3method(analyze,blavaan)
S3method(analyze,fa)
S3method(analyze,glm)
S3method(analyze,glmerMod)
S3method(analyze,htest)
S3method(analyze,lavaan)
S3method(analyze,lm)
S3method(analyze,lmerModLmerTest)
S3method(analyze,principal)
S3method(analyze,stanreg)
S3method(as.data.frame,density)
S3method(find_best_model,lavaan)
S3method(find_best_model,lmerModLmerTest)
S3method(find_best_model,stanreg)
S3method(find_combinations,formula)
S3method(get_R2,glm)
S3method(get_R2,lm)
S3method(get_R2,merMod)
S3method(get_R2,stanreg)
S3method(get_contrasts,glm)
S3method(get_contrasts,glmerMod)
S3method(get_contrasts,lm)
S3method(get_contrasts,lmerMod)
S3method(get_contrasts,lmerModLmerTest)
S3method(get_contrasts,stanreg)
S3method(get_data,lm)
S3method(get_data,merMod)
S3method(get_data,stanreg)
S3method(get_formula,glm)
S3method(get_formula,glmerMod)
S3method(get_formula,lm)
S3method(get_formula,lmerMod)
S3method(get_formula,lmerModLmerTest)
S3method(get_formula,stanreg)
S3method(get_graph,fa)
S3method(get_graph,lavaan)
S3method(get_graph,psychobject_correlation)
S3method(get_info,glm)
S3method(get_info,glmerMod)
S3method(get_info,lm)
S3method(get_info,lmerMod)
S3method(get_info,lmerModLmerTest)
S3method(get_info,stanreg)
S3method(get_means,glm)
S3method(get_means,glmerMod)
S3method(get_means,lm)
S3method(get_means,lmerMod)
S3method(get_means,lmerModLmerTest)
S3method(get_means,stanreg)
S3method(get_predicted,glm)
S3method(get_predicted,lm)
S3method(get_predicted,merMod)
S3method(get_predicted,stanreg)
S3method(interpret_lavaan,blavaan)
S3method(interpret_lavaan,lavaan)
S3method(is.mixed,stanreg)
S3method(plot,psychobject)
S3method(print,psychobject)
S3method(standardize,data.frame)
S3method(standardize,glm)
S3method(standardize,glmerMod)
S3method(standardize,lm)
S3method(standardize,lmerMod)
S3method(standardize,numeric)
S3method(standardize,stanreg)
S3method(summary,psychobject)
export(.fa_variance_text)
export(HDI)
export(HDImax)
export(HDImin)
export(R2_LOO_Adjusted)
export(R2_nakagawa)
export(R2_tjur)
export(analyze)
export(assess)
export(bayes_cor)
export(bayes_cor.test)
export(cite_packages)
export(correlation)
export(crawford.test)
export(crawford.test.freq)
export(crawford_dissociation.test)
export(create_intervals)
export(dprime)
export(find_best_model)
export(find_combinations)
export(find_distance_cluster)
export(find_highest_density_point)
export(find_matching_string)
export(find_random_effects)
export(find_season)
export(format_bf)
export(format_digit)
export(format_formula)
export(format_loadings)
export(format_p)
export(format_string)
export(get_R2)
export(get_cfa_model)
export(get_contrasts)
export(get_data)
export(get_formula)
export(get_graph)
export(get_info)
export(get_loadings_max)
export(get_means)
export(get_predicted)
export(golden)
export(interpret_R2)
export(interpret_R2_posterior)
export(interpret_RMSEA)
export(interpret_bf)
export(interpret_d)
export(interpret_d_posterior)
export(interpret_lavaan)
export(interpret_odds)
export(interpret_odds_posterior)
export(interpret_omega_sq)
export(interpret_r)
export(interpret_r_posterior)
export(is.mixed)
export(is.psychobject)
export(is.standardized)
export(mellenbergh.test)
export(model_to_priors)
export(mpe)
export(n_factors)
export(odds_to_d)
export(odds_to_probs)
export(omega_sq)
export(overlap)
export(percentile)
export(percentile_to_z)
export(plot_loadings)
export(power_analysis)
export(probs_to_odds)
export(refdata)
export(remove_empty_cols)
export(remove_outliers)
export(reorder_matrix)
export(rnorm_perfect)
export(rope)
export(simulate_data_regression)
export(standardize)
export(values)
import(broom)
import(dplyr)
import(ggcorrplot)
import(ggplot2)
import(lmerTest)
import(loo)
import(ppcor)
import(purrr)
import(rstanarm)
import(rstantools)
import(tidyr)
importFrom(BayesFactor,correlationBF)
importFrom(BayesFactor,posterior)
importFrom(DescTools,AUC)
importFrom(MASS,ginv)
importFrom(MASS,mvrnorm)
importFrom(MuMIn,r.squaredGLMM)
importFrom(MuMIn,std.coef)
importFrom(blavaan,standardizedposterior)
importFrom(broom,tidy)
importFrom(dplyr,bind_cols)
importFrom(emmeans,emmeans)
importFrom(ggplot2,cut_interval)
importFrom(ggplot2,cut_number)
importFrom(ggplot2,element_text)
importFrom(ggplot2,theme)
importFrom(graphics,pairs)
importFrom(lavaan,fitmeasures)
importFrom(lavaan,parameterEstimates)
importFrom(lme4,findbars)
importFrom(lme4,getME)
importFrom(nFactors,moreStats)
importFrom(nFactors,nScree)
importFrom(psych,VSS)
importFrom(psych,corr.test)
importFrom(purrr,discard)
importFrom(purrr,keep)
importFrom(qgraph,cor_auto)
importFrom(rstanarm,bayes_R2)
importFrom(rstanarm,kfold)
importFrom(rstanarm,loo)
importFrom(rstanarm,normal)
importFrom(scales,rescale)
importFrom(stats,approx)
importFrom(stats,as.dist)
importFrom(stats,as.formula)
importFrom(stats,complete.cases)
importFrom(stats,confint)
importFrom(stats,cor)
importFrom(stats,cor.test)
importFrom(stats,cov)
importFrom(stats,density)
importFrom(stats,dnorm)
importFrom(stats,ecdf)
importFrom(stats,family)
importFrom(stats,formula)
importFrom(stats,getCall)
importFrom(stats,hclust)
importFrom(stats,mad)
importFrom(stats,median)
importFrom(stats,model.frame)
importFrom(stats,model.matrix)
importFrom(stats,model.response)
importFrom(stats,na.omit)
importFrom(stats,nobs)
importFrom(stats,p.adjust)
importFrom(stats,pnorm)
importFrom(stats,predict)
importFrom(stats,pt)
importFrom(stats,qnorm)
importFrom(stats,quantile)
importFrom(stats,rchisq)
importFrom(stats,residuals)
importFrom(stats,rnorm)
importFrom(stats,runif)
importFrom(stats,sd)
importFrom(stats,terms)
importFrom(stats,update)
importFrom(stats,var)
importFrom(stats,vcov)
importFrom(stringr,str_remove_all)
importFrom(stringr,str_replace)
importFrom(stringr,str_squish)
importFrom(stringr,str_to_title)
importFrom(stringr,str_trim)
importFrom(tibble,rownames_to_column)
importFrom(utils,capture.output)
importFrom(utils,combn)
importFrom(utils,data)
importFrom(utils,head)
importFrom(utils,tail)
30 changes: 0 additions & 30 deletions R/analyze.R

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