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Bugfix orderedset#10

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Commits on May 26, 2020

• Create LICENSE.txt

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• Merge pull request ncihtan#1 from xdoan/patch-1

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Commits on Sep 17, 2020

• removing unneeded htan csv file from schema folder

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• Merge pull request Sage-Bionetworks#275 from milen-sage/main

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• Update README.md

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• Update README.md

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• Update README.md

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Commits on Sep 26, 2020

• Merge pull request Sage-Bionetworks#281 from Sage-Bionetworks/develop

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Commits on Sep 30, 2020

• Merge pull request Sage-Bionetworks#286 from milen-sage/develop-schema-update

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Commits on Oct 1, 2020

• Merge pull request ncihtan#4 from milen-sage/develop-schema-update

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• Merge pull request Sage-Bionetworks#290 from milen-sage/develop-schema-update

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Commits on Oct 6, 2020

• Merge pull request Sage-Bionetworks#294 from milen-sage/develop-schema-update

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• Merge pull request Sage-Bionetworks#299 from milen-sage/develop-hotfix-tables

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Commits on Oct 8, 2020

• Merge pull request Sage-Bionetworks#304 from milen-sage/develop-schema-update

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Commits on Oct 13, 2020

• Merge pull request Sage-Bionetworks#301 from milen-sage/develop-file-hierarchy

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• Merge branch 'develop-file-hierarchy' into main

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Commits on Oct 15, 2020

• Merge pull request ncihtan#5 from Sage-Bionetworks/main

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• Updating README references to ncihtan repo

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Commits on Oct 16, 2020

• Merge branch 'develop-schema-update' into main

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Commits on Oct 20, 2020

• Merge pull request Sage-Bionetworks#313 from milen-sage/develop-schema-update

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Commits on Oct 21, 2020

• Merge pull request Sage-Bionetworks#319 from milen-sage/develop-schema-update

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Commits on Oct 23, 2020

• Merge pull request Sage-Bionetworks#322 from milen-sage/develop-schema-update

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• Merge pull request Sage-Bionetworks#321 from milen-sage/develop-excel-export

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• Merge pull request Sage-Bionetworks#323 from milen-sage/develop-excel-export

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Commits on Oct 29, 2020

• Update issue templates

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• Update bug_report.md

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• Merge pull request Sage-Bionetworks#332 from Sage-Bionetworks/ychae-issue-templates

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Commits on Nov 3, 2020

• added updates to clinical data schema: molecular test; tier 2; tier 3

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• Merge pull request Sage-Bionetworks#339 from milen-sage/develop-schema-update

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Commits on Nov 5, 2020

• fixing extra apostrophe added by google sheet API on string values in data validation dropdowns when latter are derived from workbook range

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Commits on Nov 6, 2020

• Merge pull request Sage-Bionetworks#342 from milen-sage/develop-excel-export

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• update to address issue with Family History; added Alcohol exposure variable to Exposure; added corrections to clinical data tiers 2 and 3

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Commits on Nov 7, 2020

• Merge pull request Sage-Bionetworks#343 from milen-sage/develop-schema-update

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Commits on Nov 10, 2020

• Added workflow version to scRNA-seq level 3

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• Merge pull request Sage-Bionetworks#346 from milen-sage/develop-schema-update

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Commits on Nov 11, 2020

• adding csv schema input

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Commits on Nov 19, 2020

• Merge branch 'main' of https://github.com/Sage-Bionetworks/HTAN-data-pipeline into main

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Commits on Dec 15, 2020

• changes to schema reflecting clinical data updates and date-related field changes

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• adding country of residence ot demographics

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• updated conoutry of residence desc

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• Merge pull request Sage-Bionetworks#365 from milen-sage/develop-schema-update

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Commits on Dec 16, 2020

• changes to sequencing assays adding read indicator for paired sequencing (e.g. is a file read1 or 2); for all sequencing levels > 1 we don't need parent biospecimen ID, we required parent data file…

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• minor changes to attribute description for start/stop date for events; added Not Shipped as an option for shipping method type

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Commits on Dec 17, 2020

• Merge pull request Sage-Bionetworks#367 from milen-sage/develop-schema-update

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Commits on Dec 18, 2020

• Minor updates: adding MERFISH to imaging level 2

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• Merge pull request Sage-Bionetworks#371 from milen-sage/develop-schema-update

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Commits on Dec 22, 2020

• Merge branch 'main' of https://github.com/Sage-Bionetworks/HTAN-data-pipeline into main

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Commits on Jan 15, 2021

• Added Nuclei Isolation as an option for scRNA-seq level 1 Single Cell Isolation Method

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Commits on Jan 18, 2021

• Merge pull request Sage-Bionetworks#379 from milen-sage/develop-schema-update

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Commits on Jan 19, 2021

• added trim_commas_df() to fix trailing commas in manifest file

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Commits on Jan 20, 2021

• Merge branch 'main' of https://github.com/Sage-Bionetworks/HTAN-data-pipeline into main

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• all dropdown values are now stored in hidden sheet explicitly; previously only columns with dropdowns containing more than 10 items were explicitly added to the hidden sheet; this addresses a user-…

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• added trim_commas_df() to fix trailing commas in manifest file

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Commits on Jan 21, 2021

• Merge pull request Sage-Bionetworks#384 from milen-sage/main

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Commits on Jan 28, 2021

• trim_commas_df to remove only trailing empty columns

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Commits on Jan 29, 2021

• Merge pull request Sage-Bionetworks#391 from Sage-Bionetworks/main-trim_commas_df-bugfix

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Commits on Feb 5, 2021

• removing unneeded calls to Synapse, which result in large delays for datasets with a lot of files (~10000)

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• removing unneeded error handling

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• Merge pull request Sage-Bionetworks#395 from milen-sage/main

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Commits on Feb 6, 2021

• update store.py

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• Merge pull request Sage-Bionetworks#399 from Sage-Bionetworks/allaway/useSchemaLabel

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• fix typo

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• Merge pull request Sage-Bionetworks#400 from Sage-Bionetworks/allaway-patch-1

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Commits on Feb 9, 2021

• handler for mismatched component and template type in validator

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• handler for mismatched component and template type in validator

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Commits on Feb 17, 2021

• added duct carcinoma to HTAN clinical data

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• added duct carcinoma to HTAN clinical data; added a third read to scATAC-seq based on requests from data contributors

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Commits on Feb 19, 2021

• Merge pull request Sage-Bionetworks#408 from milen-sage/main

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Commits on Feb 22, 2021

• Merge pull request ncihtan#6 from Sage-Bionetworks/main

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Commits on Mar 1, 2021

• minor updates to schema reflecting requests for 1st HTAN data release

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Commits on Mar 2, 2021

• change 'cell' to 'cell am' format to avoid conflict with entity Cell in biothings, which does not have displayName attribute

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Commits on Mar 9, 2021

• Merge pull request ncihtan#7 from milen-sage/main

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Commits on Jul 15, 2021

• Changed dependency: orderedset -> ordered-set

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