Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

NML export #126

Draft
wants to merge 8 commits into
base: master
Choose a base branch
from
Draft

NML export #126

wants to merge 8 commits into from

Conversation

perlman
Copy link

@perlman perlman commented Oct 27, 2023

Support export of the NML format used in WebKnossos.

This is work in progress. This is just a very rough prototype to output a single neuron.

  • Basic NML export
  • Zip'd NML export
  • Multiple skeletons in a single NML file (optional)
  • Test data in WebKnossos
  • Support the full range of inputs (single neuron, neuron list, etc)
  • Add NML tests

Example:

neuron = navis.read_swc("1.swc")
navis.write_nml(neuron, "1.nml")

@perlman
Copy link
Author

perlman commented Jun 24, 2024

@conochur Let's get this to a state for merging. =)

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

2 participants