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Bump the pip-dependencies group with 8 updates #244

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merged 1 commit into from
Nov 8, 2024
Merged

Bump the pip-dependencies group with 8 updates #244

merged 1 commit into from
Nov 8, 2024

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Bumps the pip-dependencies group with 8 updates:

Package From To
netcdf4 1.7.1.post2 1.7.2
xarray 2024.9.0 2024.10.0
mypy 1.12.1 1.13.0
ruff 0.7.0 0.7.2
pytest-cov 5.0.0 6.0.0
mkdocs-material 9.5.42 9.5.43
harmony-service-lib 2.1.0 2.2.0
harmony-py 0.4.15 0.5.0

Updates netcdf4 from 1.7.1.post2 to 1.7.2

Changelog

Sourced from netcdf4's changelog.

since version 1.7.2 release

  • fix type hint for createEnumType (issue #1378)
  • add python 3.13 to windows wheel builds (PR #1377)

version 1.7.2 (tag v1.7.2rel)

  • add static type hints (PRs #1302, #1349)
  • Expose nc_rc_set, nc_rc_get (via rc_set, rc_get module functions). (PR #1348)
  • Add Variable.get_fill_value and allow fill_value='default' to set _FillValue attribute using default fill values. (issue #1374, PR #1375).
  • Fix NETCDF3 endian error (issue #1373, PR #1355).

version 1.7.1 (tag v1.7.1rel)

  • include nc_complex source code from v0.2.0 tag (instead of using submodule).
  • add aarch64 wheels.

version 1.7.0 (tag v1.7.0rel)

  • add support for complex numbers via auto_complex keyword to Dataset (PR #1295)
  • fix for deprecated Cython DEF and IF statements using compatibility header with shims for unavailable functionality (PR #1277)
  • use szip as the library name on Windows (PR #1304)
  • add support for MS-MPI MPI_Message detection (PR #1305)
  • fix for issue #1306 - surprising result when indexing vlen str with non-contiguous indices.
  • Fix bug in set_collective introduced in PR #1277 (collective mode was always set).

version 1.6.5 (tag v1.6.5rel)

  • fix for issue #1271 (mask ignored if bool MA assigned to uint8 var)
  • include information on specific object when reporting errors from netcdf-c
  • python 3.12 wheels added, support for python 3.7 removed.

version 1.6.4 (tag v1.6.4rel)

  • set path to SSL certificates internally, so https DAP URLs work with wheels (issue #1246, requires nc_rc_set function available starting with netcdf-c 4.9.1, plus bugfix in netcdf-c PR #2690). Added certifi as a dependency.
  • Added isopen method to MFDataset object to check if underlying files are open.

version 1.6.3 (tag v1.6.3rel)

  • Use nc_put_vars for strided writes for netcdf-c >= 4.6.2 (issue #1222).
  • _Unsigned="false" should be same as not having _Unsigned set (issue #1232). _Unsigned now must be set to "true" or "True" for variable to be interpreted as unsigned, instead of just having _Unsigned be set (to anything).

... (truncated)

Commits

Updates xarray from 2024.9.0 to 2024.10.0

Release notes

Sourced from xarray's releases.

v2024.10.0

This release brings official support for xarray.DataTree, and compatibility with zarr-python v3!

Aside from these two huge features, it also improves support for vectorised interpolation and fixes various bugs.

Thanks to the 31 contributors to this release: Alfonso Ladino, DWesl, Deepak Cherian, Eni, Etienne Schalk, Holly Mandel, Ilan Gold, Illviljan, Joe Hamman, Justus Magin, Kai Mühlbauer, Karl Krauth, Mark Harfouche, Martey Dodoo, Matt Savoie, Maximilian Roos, Patrick Hoefler, Peter Hill, Renat Sibgatulin, Ryan Abernathey, Spencer Clark, Stephan Hoyer, Tom Augspurger, Tom Nicholas, Vecko, Virgile Andreani, Yvonne Fröhlich, carschandler, joseph nowak, mgunyho and owenlittlejohns

What's Changed

... (truncated)

Commits
  • 165177e v2024.10.0 release summary (#9678)
  • fbe73ef drop the length from numpy's fixed-width string dtypes (#9586)
  • f24cae3 fixing behaviour for group parameter in open_datatree (#9666)
  • 519f05e Use zarr v3 dimension_names (#9669)
  • 5b2e6f1 fix(zarr): use inplace array.resize for zarr 2 and 3 (#9673)
  • 1f5889a implement dask methods on DataTree (#9670)
  • 521b087 support chunks in open_groups and open_datatree (#9660)
  • b133fdc Compatibility for zarr-python 3.x (#9552)
  • 4798707 Update to_dataframe doc to match current behavior (#9662)
  • 5632c8e Reduce graph size through writing indexes directly into graph for ``map_block...
  • Additional commits viewable in compare view

Updates mypy from 1.12.1 to 1.13.0

Changelog

Sourced from mypy's changelog.

Mypy Release Notes

Next release

Change to enum membership semantics

As per the updated typing specification for enums, enum members must be left unannotated.

class Pet(Enum):
    CAT = 1  # Member attribute
    DOG = 2  # Member attribute
    WOLF: int = 3  # New error: Enum members must be left unannotated
species: str  # Considered a non-member attribute

In particular, the specification change can result in issues in type stubs (.pyi files), since historically it was common to leave the value absent:

# In a type stub (.pyi file)
class Pet(Enum):
# Change in semantics: previously considered members, now non-member attributes
CAT: int
DOG: int
# Mypy will now issue a warning if it detects this situation in type stubs:
# > Detected enum "Pet" in a type stub with zero members.
# > There is a chance this is due to a recent change in the semantics of enum membership.
# > If so, use `member = value` to mark an enum member, instead of `member: type`

class Pet(Enum):
# As per the specification, you should now do one of the following:
DOG = 1  # Member attribute with value 1 and known type
WOLF = cast(int, ...)  # Member attribute with unknown value but known type
LION = ...  # Member attribute with unknown value and unknown type

Contributed by Terence Honles in PR 17207 and Shantanu Jain in PR 18068.

Mypy 1.13

We’ve just uploaded mypy 1.13 to the Python Package Index (PyPI). Mypy is a static type checker for Python. You can install it as follows:

python3 -m pip install -U mypy

... (truncated)

Commits

Updates ruff from 0.7.0 to 0.7.2

Release notes

Sourced from ruff's releases.

0.7.2

Release Notes

Preview features

  • Fix formatting of single with-item with trailing comment (#14005)
  • [pyupgrade] Add PEP 646 Unpack conversion to * with fix (UP044) (#13988)

Rule changes

  • Regenerate known_stdlibs.rs with stdlibs 2024.10.25 (#13963)
  • [flake8-no-pep420] Skip namespace package enforcement for PEP 723 scripts (INP001) (#13974)

Server

  • Fix server panic when undoing an edit (#14010)

Bug fixes

  • Fix issues in discovering ruff in pip build environments (#13881)
  • [flake8-type-checking] Fix false positive for singledispatchmethod (TCH003) (#13941)
  • [flake8-type-checking] Treat return type of singledispatch as runtime-required (TCH003) (#13957)

Documentation

  • [flake8-simplify] Include caveats of enabling if-else-block-instead-of-if-exp (SIM108) (#14019)

Install ruff 0.7.2

Install prebuilt binaries via shell script

curl --proto '=https' --tlsv1.2 -LsSf https://github.com/astral-sh/ruff/releases/download/0.7.2/ruff-installer.sh | sh

Install prebuilt binaries via powershell script

powershell -ExecutionPolicy ByPass -c "irm https://github.com/astral-sh/ruff/releases/download/0.7.2/ruff-installer.ps1 | iex"

Download ruff 0.7.2

File Platform Checksum
ruff-aarch64-apple-darwin.tar.gz Apple Silicon macOS checksum
ruff-x86_64-apple-darwin.tar.gz Intel macOS checksum
ruff-aarch64-pc-windows-msvc.zip ARM64 Windows checksum
ruff-i686-pc-windows-msvc.zip x86 Windows checksum
ruff-x86_64-pc-windows-msvc.zip x64 Windows checksum

... (truncated)

Changelog

Sourced from ruff's changelog.

0.7.2

Preview features

  • Fix formatting of single with-item with trailing comment (#14005)
  • [pyupgrade] Add PEP 646 Unpack conversion to * with fix (UP044) (#13988)

Rule changes

  • Regenerate known_stdlibs.rs with stdlibs 2024.10.25 (#13963)
  • [flake8-no-pep420] Skip namespace package enforcement for PEP 723 scripts (INP001) (#13974)

Server

  • Fix server panic when undoing an edit (#14010)

Bug fixes

  • Fix issues in discovering ruff in pip build environments (#13881)
  • [flake8-type-checking] Fix false positive for singledispatchmethod (TCH003) (#13941)
  • [flake8-type-checking] Treat return type of singledispatch as runtime-required (TCH003) (#13957)

Documentation

  • [flake8-simplify] Include caveats of enabling if-else-block-instead-of-if-exp (SIM108) (#14019)

0.7.1

Preview features

  • Fix E221 and E222 to flag missing or extra whitespace around == operator (#13890)
  • Formatter: Alternate quotes for strings inside f-strings in preview (#13860)
  • Formatter: Join implicit concatenated strings when they fit on a line (#13663)
  • [pylint] Restrict iteration-over-set to only work on sets of literals (PLC0208) (#13731)

Rule changes

  • [flake8-type-checking] Support auto-quoting when annotations contain quotes (#11811)

Server

  • Avoid indexing the workspace for single-file mode (#13770)

Bug fixes

  • Make ARG002 compatible with EM101 when raising NotImplementedError (#13714)

Other changes

  • Introduce more Docker tags for Ruff (similar to uv) (#13274)
Commits

Updates pytest-cov from 5.0.0 to 6.0.0

Changelog

Sourced from pytest-cov's changelog.

6.0.0 (2024-10-29)

  • Updated various documentation inaccuracies, especially on subprocess handling.
  • Changed fail under checks to use the precision set in the coverage configuration. Now it will perform the check just like coverage report would.
  • Added a --cov-precision cli option that can override the value set in your coverage configuration.
  • Dropped support for now EOL Python 3.8.
Commits
  • 9540437 Bump version: 5.0.0 → 6.0.0
  • 9f81754 Further trim down envs and drop Python 3.8.
  • b12b5ec Update conf.
  • 23f4b27 Update changelog.
  • 291a04f Bump test deps and trim config.
  • 08f1101 Add --cov-precision option. Close #655.
  • 76fe2a7 Move the warnings/errors in a place that doesn't import anything.
  • a9ea7b7 Implement error/warning for the bad dynamic_context being set in config.
  • c299e01 Add explicit suffixing to make it easier to see the identify the sources/usag...
  • c87e546 Add reproducer for weird xdist dynamic_context interaction. Ref #604.
  • Additional commits viewable in compare view

Updates mkdocs-material from 9.5.42 to 9.5.43

Release notes

Sourced from mkdocs-material's releases.

mkdocs-material-9.5.43

  • Added support for external images in SVGs in privacy plugin
  • Fixed #7651: Privacy plugin doesn't handle quoted URLs in CSS

Thanks go to @​nejch for their contributions

Changelog

Sourced from mkdocs-material's changelog.

mkdocs-material-9.5.43 (2024-10-31)

  • Added support for external images in SVGs in privacy plugin
  • Fixed #7651: Privacy plugin doesn't handle quoted URLs in CSS

mkdocs-material-9.5.42 (2024-10-20)

  • Fixed #7625: Invalid encoding of boolean attributes in privacy plugin
  • Fixed #7624: Crash when disabling privacy plugin (9.5.41 regression)

mkdocs-material-9.5.41 (2024-10-15)

  • Fixed #7619: Improved tooltip on logo disappears after instant navigation
  • Fixed #7616: Race condition in built-in privacy plugin when inlining assets
  • Fixed #7615: Comments and "Was this page helpful?" visible when printing

mkdocs-material-9.5.40 (2024-10-10)

  • Updated Latvian translations
  • Fixed #7597: Social cards not using site name on home page

mkdocs-material-9.5.39+insiders-4.53.14 (2024-09-29)

  • Fixed #7567: Empty headlines when using typeset plugin with anchorlinks

mkdocs-material-9.5.39 (2024-09-29)

  • Fixed #7226: not staying on page when using mike's canonical versioning

mkdocs-material-9.5.38 (2024-09-26)

  • Added Albanian translations

mkdocs-material-9.5.37 (2024-09-25)

  • Added 4th and 5th level ordered list styles
  • Fixed #7548: Tags have no spacing in search

mkdocs-material-9.5.36 (2024-09-21)

  • Fixed #7544: Social cards incorrectly rendering HTML entities
  • Fixed #7542: Improved support for setting custom list styles

mkdocs-material-9.5.35 (2024-09-18)

  • Fixed #7498: Search not showing for Vietnamese language

mkdocs-material-9.5.34+insiders-4.53.13 (2024-09-14)

  • Fixed #7520: Social plugin errors for generated files (MkDocs 1.6+)

... (truncated)

Commits

Updates harmony-service-lib from 2.1.0 to 2.2.0

Release notes

Sourced from harmony-service-lib's releases.

v2.2.0

  • HARMONY-1645: Drop support for EOL Python 3.8 and test with 3.12 and 3.13 (#50) @​chris-durbin
Commits
  • adaa1ee Update release version to v2.2.0
  • c1a2e0f HARMONY-1645: Set the python-versions to all be strings due to 3.10 getting t...
  • a11f526 HARMONY-1645: Drop support for EOL Python 3.8 and test with 3.12 and 3.13.
  • See full diff in compare view

Updates harmony-py from 0.4.15 to 0.5.0

Release notes

Sourced from harmony-py's releases.

v0.5.0

Commits
  • 5d218d5 Update release version to v0.5.0
  • 2653c6a Update release version to v0.4.16
  • cc1986a HARMONY-1646: Update supported Python versions to 3.9 through 3.13.
  • e363ec3 HARMONY-1909: Remove setup.py.
  • 06fdd59 HARMONY-1909: Updated all notebooks with the new helper import function.
  • 04b1b7a HARMONY-1909: Fix make build.
  • 0db3a6d HARMONY-1921: Fix tutorial notebook; Update WKT LINESTRING documentation.
  • 6080b2c HARMONY-1909: Replace setup.py with pyproject.toml
  • 7f91fcd HARMONY-1859: Fix readthedocs format.
  • 3884cda HARMONY-1859: Updated documentation.
  • Additional commits viewable in compare view

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📚 Documentation preview 📚: https://stitchee--244.org.readthedocs.build/en/244/

@dependabot
Bump the pip-dependencies group with 8 updates
06d798f 
Bumps the pip-dependencies group with 8 updates:

| Package | From | To |
| --- | --- | --- |
| [netcdf4](https://github.com/Unidata/netcdf4-python) | `1.7.1.post2` | `1.7.2` |
| [xarray](https://github.com/pydata/xarray) | `2024.9.0` | `2024.10.0` |
| [mypy](https://github.com/python/mypy) | `1.12.1` | `1.13.0` |
| [ruff](https://github.com/astral-sh/ruff) | `0.7.0` | `0.7.2` |
| [pytest-cov](https://github.com/pytest-dev/pytest-cov) | `5.0.0` | `6.0.0` |
| [mkdocs-material](https://github.com/squidfunk/mkdocs-material) | `9.5.42` | `9.5.43` |
| [harmony-service-lib](https://github.com/nasa/harmony-service-lib-py) | `2.1.0` | `2.2.0` |
| [harmony-py](https://github.com/nasa/harmony-py) | `0.4.15` | `0.5.0` |


Updates `netcdf4` from 1.7.1.post2 to 1.7.2
- [Release notes](https://github.com/Unidata/netcdf4-python/releases)
- [Changelog](https://github.com/Unidata/netcdf4-python/blob/master/Changelog)
- [Commits](https://github.com/Unidata/netcdf4-python/commits)

Updates `xarray` from 2024.9.0 to 2024.10.0
- [Release notes](https://github.com/pydata/xarray/releases)
- [Changelog](https://github.com/pydata/xarray/blob/main/HOW_TO_RELEASE.md)
- [Commits](pydata/xarray@v2024.09.0...v2024.10.0)

Updates `mypy` from 1.12.1 to 1.13.0
- [Changelog](https://github.com/python/mypy/blob/master/CHANGELOG.md)
- [Commits](python/mypy@v1.12.1...v1.13.0)

Updates `ruff` from 0.7.0 to 0.7.2
- [Release notes](https://github.com/astral-sh/ruff/releases)
- [Changelog](https://github.com/astral-sh/ruff/blob/main/CHANGELOG.md)
- [Commits](astral-sh/ruff@0.7.0...0.7.2)

Updates `pytest-cov` from 5.0.0 to 6.0.0
- [Changelog](https://github.com/pytest-dev/pytest-cov/blob/master/CHANGELOG.rst)
- [Commits](pytest-dev/pytest-cov@v5.0.0...v6.0.0)

Updates `mkdocs-material` from 9.5.42 to 9.5.43
- [Release notes](https://github.com/squidfunk/mkdocs-material/releases)
- [Changelog](https://github.com/squidfunk/mkdocs-material/blob/master/CHANGELOG)
- [Commits](squidfunk/mkdocs-material@9.5.42...9.5.43)

Updates `harmony-service-lib` from 2.1.0 to 2.2.0
- [Release notes](https://github.com/nasa/harmony-service-lib-py/releases)
- [Commits](nasa/harmony-service-lib-py@v2.1.0...v2.2.0)

Updates `harmony-py` from 0.4.15 to 0.5.0
- [Release notes](https://github.com/nasa/harmony-py/releases)
- [Commits](nasa/harmony-py@v0.4.15...v0.5.0)

---
updated-dependencies:
- dependency-name: netcdf4
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: pip-dependencies
- dependency-name: xarray
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: pip-dependencies
- dependency-name: mypy
  dependency-type: direct:development
  update-type: version-update:semver-minor
  dependency-group: pip-dependencies
- dependency-name: ruff
  dependency-type: direct:development
  update-type: version-update:semver-patch
  dependency-group: pip-dependencies
- dependency-name: pytest-cov
  dependency-type: direct:development
  update-type: version-update:semver-major
  dependency-group: pip-dependencies
- dependency-name: mkdocs-material
  dependency-type: direct:development
  update-type: version-update:semver-patch
  dependency-group: pip-dependencies
- dependency-name: harmony-service-lib
  dependency-type: direct:development
  update-type: version-update:semver-minor
  dependency-group: pip-dependencies
- dependency-name: harmony-py
  dependency-type: direct:development
  update-type: version-update:semver-minor
  dependency-group: pip-dependencies
...

Signed-off-by: dependabot[bot] <[email protected]>
@dependabot dependabot bot added dependencies Pull requests that update a dependency file python Pull requests that update Python code labels Nov 1, 2024
@danielfromearth danielfromearth merged commit e0f72ed into develop Nov 8, 2024
4 checks passed
@dependabot dependabot bot deleted the dependabot/pip/develop/pip-dependencies-bf166c814d branch November 8, 2024 15:48
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