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131 Open 231 Closed
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Issues list

Filtering bedmethyl file and DMR analysis DMR modkit dmr question Looking for clarification on inputs and/or outputs
#364 opened Feb 3, 2025 by baibhav-bioinfo
2
Combining 5mC with 5hmC question Looking for clarification on inputs and/or outputs
#363 opened Feb 2, 2025 by bopohdr
1
bedmethyl merge is too slow and uses too much memory! bug Something isn't working build-available custom build produced for fix.
#362 opened Jan 31, 2025 by ArtRand
1
Do you use modkit dmr? good first issue Good for newcomers
#361 opened Jan 31, 2025 by ArtRand
find-motifs stuck in loop? bug Something isn't working
#360 opened Jan 31, 2025 by Ge0rges
2
Final CpG of read detection question Looking for clarification on inputs and/or outputs
#359 opened Jan 29, 2025 by benjamin-bfeng
3
modkit dmr pair: sampled 0 a records and 0 b records troubleshooting workflow and data preparation questions
#358 opened Jan 29, 2025 by leetaiyi
2
threshold modification in modkit pileup question Looking for clarification on inputs and/or outputs
#357 opened Jan 29, 2025 by baibhav-bioinfo
1
Feature Request: Add --partition-tag option to "modkit extract calls" enhancement New feature or request
#356 opened Jan 28, 2025 by zaka-edd
2
Haplotagged CRAM and bedmethyl question Looking for clarification on inputs and/or outputs
#355 opened Jan 27, 2025 by umranyaman
4
Dorado for basecalling vs modification detection question Looking for clarification on inputs and/or outputs
#354 opened Jan 27, 2025 by baibhav-bioinfo
2
fetching sequence failed, FASTA read interval was out of bounds troubleshooting workflow and data preparation questions
#353 opened Jan 26, 2025 by TKsh6
1
find-motifs --contig failed to parse any bedmethyl records
#349 opened Jan 17, 2025 by Ge0rges
5
Quality of life suggestion for motif bed documentation Improvements or additions to documentation enhancement New feature or request
#348 opened Jan 16, 2025 by Ge0rges
2
How to Filter Sites for High-Confidence Modifications? question Looking for clarification on inputs and/or outputs
#346 opened Jan 16, 2025 by evans-ZH
5
assess the precision of the 4mC ratio question Looking for clarification on inputs and/or outputs
#344 opened Jan 15, 2025 by hannan666666
2
Error during merging bedmethyl files troubleshooting workflow and data preparation questions
#342 opened Jan 14, 2025 by ralanany
1
I have some questions regarding the bed methyl file, would you help? question Looking for clarification on inputs and/or outputs
#340 opened Jan 14, 2025 by ralanany
1
--ref <REFERENCE_FASTA> is to select the reference genome or transcriptome question Looking for clarification on inputs and/or outputs
#338 opened Jan 10, 2025 by Tang-pro
2
Feature request enhancement New feature or request
#337 opened Jan 9, 2025 by kamaloxfordpathology
2
Samtools code for modkit repair documentation Improvements or additions to documentation
#336 opened Jan 9, 2025 by sandraionescu
1
failed to get modbase info for record 6bcfdea5-e9eb-4fc9-a72e-81744a77df80, Skipped: AUX data not found question Looking for clarification on inputs and/or outputs
#335 opened Jan 8, 2025 by Tang-pro
5
FEATURE REQUEST: Extract/Calls reports number of CpG's covered in the sample
#332 opened Jan 6, 2025 by ethan-mcq
3
no m6A sites found in results question Looking for clarification on inputs and/or outputs troubleshooting workflow and data preparation questions
#331 opened Jan 4, 2025 by baibhav-bioinfo
1
Thank you, for the amazing tool, I have 9 bedmethyl files(4 control and 5 disease cases), these files generated from modkit tool. I have some questions question Looking for clarification on inputs and/or outputs
#328 opened Jan 2, 2025 by ralanany
1
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