Skip to content

Support scripts for the JOBIM poster "Benchmarking Hi-C scaffolders".

Notifications You must be signed in to change notification settings

nadegeguiglielmoni/Benchmarking_Hi-C_scaffolders

Folders and files

NameName
Last commit message
Last commit date

Latest commit

 

History

17 Commits
 
 
 
 
 
 
 
 
 
 
 
 

Repository files navigation

Benchmarking Hi-C scaffolders

This repository provides command lines and additional information for the poster "Benchmarking Hi-C scaffolders", presented at JOBIM 2019.

This work evaluates three Hi-C scaffolders, 3D-DNA, instaGRAAL and SALSA2, on the genomes of Caenorhabditis elegans and Drosophila melanogaster.

Data used for C. elegans comes from:

Data used for D. melanogaster comes from:

Overview of the benchmark

The command lines and script to generate the simulated fragmented genomes are in simulation/. The command lines to run the scaffolders are in scaffolding/. The command lines for quality assessment and additional data are in quality_assessment.

About

Support scripts for the JOBIM poster "Benchmarking Hi-C scaffolders".

Resources

Stars

Watchers

Forks

Releases

No releases published

Packages

No packages published