Merge pull request #138 from n8thangreen/main

Main back to dev

CRAN-SUBMISSION

@@ -1,3 +1,3 @@
-Version: 2.4.3
-Date: 2023-05-02 15:57:14 UTC
-SHA: 849eaea3529ff1cdbddbd3e537c66e9b2da26194
+Version: 2.4.4
+Date: 2023-06-05 11:24:02 UTC
+SHA: 315d3e90d9c230d5ea30b5e5540e1943398ab87e

DESCRIPTION

@@ -1,7 +1,7 @@
 Package: BCEA
 Type: Package
 Title: Bayesian Cost Effectiveness Analysis
-Version: 2.4.3
+Version: 2.4.4
 Authors@R: c(
     person("Gianluca", "Baio",
             email = "[email protected]",

NEWS.md

@@ -1,4 +1,9 @@
 
+# BCEA 2.4.4
+June 2023
+
+* Patch to fix a CRAN checks error. Suggested package `MCMCvis` wasn't used conditionally in unit test. Moved to Required packages in `DESCRIPTION`.
+
 # BCEA 2.4.3
 May 2023
 

README.md

@@ -34,12 +34,12 @@ Main features of `BCEA` include:
 * EVPPI calculations and plots
 
 ## Installation
-Install the [released version from CRAN](https://cran.r-project.org/web/packages/BCEA/index.html) with
+Install the [released version from CRAN](https://cran.r-project.org/package=BCEA) with
 ```r
 install.packages("BCEA")
 ```
 
-The development version can be installed using this GitHub repository. On Windows machines, you need to install a few dependencies, including [Rtools](https://cran.r-project.org/bin/windows/Rtools/) first, e.g. by running
+The stable version (which can be updated more quickly) can be installed using this GitHub repository. On Windows machines, you need to install a few dependencies, including [Rtools](https://cran.r-project.org/bin/windows/Rtools/) first, e.g. by running
 
 ```r
 pkgs <- c("MASS", "Rtools", "remotes")
@@ -49,13 +49,13 @@ install.packages(pkgs, repos=repos, dependencies = "Depends")
 before installing the package using `remotes`:
 
 ```r
-remotes::install_github("giabaio/BCEA", ref="dev")
+remotes::install_github("giabaio/BCEA")
 ```
 Under Linux or MacOS, it is sufficient to install the package via `remotes`:
 
 ```r
 install.packages("remotes")
-remotes::install_github("giabaio/BCEA", ref="dev")
+remotes::install_github("giabaio/BCEA")
 ```
 
 ## Articles

cran-comments.md

@@ -1,30 +1,8 @@
 
-# Resubmission (2.4.3)
+# Resubmission (2.4.4)
 
-* compute.evppi() was mismatched with the dplyr compute() function. We've changed the 
-function name to compute_evppi() to avoid confusion since it is only an internal function.
+* Suggested package wasn't used conditionally in unit test causing CRAN check error. `MCMCvis` is now moved to Required packages.
 
-CHECK message:
-
-Flavor: r-devel-linux-x86_64-debian-gcc
-Check: S3 generic/method consistency, Result: NOTE
-  Mismatches for apparent methods not registered:
-  compute:
-    function(x, ...)
-  compute.evppi:
-    function(he, fit.full)
-
-* Similarly, the internal function plot.mesh() is not a plot method but was being considered so,
-so we have renamed to plot_mesh()
-
-CHECK message:
-
-  plot:
-    function(x, ...)
-  plot.mesh:
-    function(mesh, data, plot)
-  See section 'Registering S3 methods' in the 'Writing R Extensions'
-  manual.
 
 ## R CMD check results
 
@@ -50,5 +28,3 @@ We checked 2 reverse dependencies (missingHE, heesim), comparing R CMD check res
 * We saw 0 new problems
 * We failed to check 0 packages
 
-
-