run-tool-test-command #260
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| name: Run tool test against galaxy server | |
| on: | |
| repository_dispatch: | |
| types: [run-tool-test-command] | |
| jobs: | |
| setup: | |
| name: Run test | |
| if: github.repository_owner == 'mvdbeek' | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python-version: [3.7] | |
| steps: | |
| - name: Add reaction | |
| uses: peter-evans/create-or-update-comment@v1 | |
| with: | |
| token: ${{ secrets.PAT }} | |
| repository: ${{ github.event.client_payload.github.payload.repository.full_name }} | |
| comment-id: ${{ github.event.client_payload.github.payload.comment.id }} | |
| reaction-type: hooray | |
| - uses: actions/setup-python@v1 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install galaxy-tool-util | |
| run: pip install 'galaxy-tool-util>=21.1.0.dev3' pysam | |
| - name: Install planemo | |
| run: git clone --recursive https://github.com/galaxyproject/planemo && pip install planemo/ | |
| - name: Run tool test | |
| if: ${{ github.event.client_payload.slash_command.args.named.server != 'https://test.galaxyproject.org' }} | |
| run: galaxy-tool-test -u https://usegalaxy.org -k "${{ secrets.GALAXY_API_KEY }}" -t "${{github.event.client_payload.slash_command.args.named.tool_id}}" -j test_result.json --parallel-tests 10 --download-attempts 32 --download-sleep 2 | |
| - name: Run tool test | |
| if: ${{ github.event.client_payload.slash_command.args.named.server == 'https://test.galaxyproject.org' }} | |
| run: galaxy-tool-test -u https://test.galaxyproject.org -k "${{ secrets.TEST_API_KEY }}" -t "${{github.event.client_payload.slash_command.args.named.tool_id}}" -j test_result.json --parallel-tests 10 --download-attempts 32 --download-sleep 2 | |
| - name: Create test markdown report | |
| if: always() | |
| run: planemo test_reports test_result.json --test_output_markdown report.md | |
| - name: Read report | |
| if: always() | |
| id: report | |
| run: | | |
| body=$(cat report.md) | |
| body="${body//'%'/'%25'}" | |
| body="${body//$'\n'/'%0A'}" | |
| body="${body//$'\r'/'%0D'}" | |
| echo "::set-output name=markdown::$body" | |
| - name: Create comment | |
| if: always() | |
| uses: peter-evans/create-or-update-comment@v1 | |
| with: | |
| token: ${{ secrets.PAT }} | |
| repository: ${{ github.event.client_payload.github.payload.repository.full_name }} | |
| issue-number: ${{ github.event.client_payload.github.payload.issue.number }} | |
| body: | | |
| ${{ steps.report.outputs.markdown }} |