CRAN accepted version.

DESCRIPTION

@@ -2,15 +2,16 @@ Package: fslr
 Type: Package
 Title: Wrapper Functions for FSL (FMRIB Software Library) from Functional MRI
     of the Brain (FMRIB)
-Version: 1.4.4
-Date: 2015-04-22
+Version: 1.4.5
+Date: 2015-05-21
 Author: John Muschelli <[email protected]>
 Maintainer: John Muschelli <[email protected]>
 Description: Wrapper functions that interface with FSL
     (http://fsl.fmrib.ox.ac.uk/fsl/fslwiki/), a powerful and commonly-used
     neuroimaging software, using system commands. The goal is to be able to
-    interface with FSL completely in R, where you pass R nifti objects and the
-    function executes an FSL command and returns an R nifti object if desired.
+    interface with FSL completely in R, where you pass R objects of class "nifti", 
+    implemented by package 'oro.nifti', and the function executes an FSL command 
+    and returns an R object of class "nifti" if desired.
 Imports: 
     methods,
     matrixStats,
@@ -19,7 +20,7 @@ Imports:
 Depends:
     stringr,
     oro.nifti (>= 0.5.0)
-License: GPL-2
+License: GPL-3
 VignetteBuilder: knitr
 Suggests:
     knitr

NEWS

@@ -0,0 +1,7 @@
+fslr v1.4-4 (Release date: 2015-05-20)
+==============
+
+Changes:
+
+* Moved functions such as cal_img to oro.nifti package.  They are all legacies, such as cal_img still works, but calibrateImage and other camelCase functions have been made default.
+* Fixed fsl_biascorrect.  

R/fslchfiletype.R

@@ -48,7 +48,7 @@ fslchfiletype = function(
 #' @export
 #' @examples
 #' if (have.fsl()){
-#'  fslchfiletype()
+#'  fslchfiletype.help()
 #' }  
 fslchfiletype.help = function(){
   return(fslhelp("fslchfiletype"))

man/fslchfiletype.help.Rd

@@ -14,7 +14,7 @@ This function calls \code{fslchfiletype}'s help
 }
 \examples{
 if (have.fsl()){
- fslchfiletype()
+ fslchfiletype.help()
 }
 }