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Simplified target/bait inputs #970

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@anoronh4 anoronh4 commented Sep 9, 2022

Previously we have required several tempo files to be generated for each baitset. The processes for generating files such as the coding bed, the intervals list, etc, were not well-documented or formalized, which presents a problem for ease of use and standardization. This PR aims to simplify that process by only requiring the targets.bed and baits.bed and creating the other necessary files within Tempo with a new process.

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@anoronh4 anoronh4 changed the base branch from master to develop September 9, 2022 18:57
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I agree this is indeed simplifying the process. But I guess there might be some additional conflicts resolving involved regarding placeHolder values and storeDir.

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