Merge pull request #986 from mskcc/bugfix/fix_process_directives

moved process directives that use . (dot) notation to a process closure
mskcc · Jun 15, 2023 · 2ea61ff · 2ea61ff
2 parents b574758 + 115c6e0
commit 2ea61ff
Showing 1 changed file with 2 additions and 3 deletions.
diff --git a/conf/juno.config b/conf/juno.config
@@ -18,11 +18,10 @@ process {
   clusterOptions = ""
   scratch = true
   beforeScript = "module load singularity/3.1.1; unset R_LIBS; catch_term () { echo 'caught USR2/TERM signal'; set +e; false; on_exit ; } ; trap catch_term USR2 TERM"
+  maxRetries = 3
+  errorStrategy = { task.attempt <= process.maxRetries ? 'retry' : 'ignore' }
 }
 
-process.maxRetries = 3
-process.errorStrategy = { task.attempt <= process.maxRetries ? 'retry' : 'ignore' }
-
 params {
   max_memory = "128.GB"
   mem_per_core = true