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Feature/nucleovar operator #1365

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f876389
upading access get_request_id function
Aug 21, 2024
903c14f
remove un-necessary functions
Aug 21, 2024
676fa01
partial update, not functional
Sep 10, 2024
b8f46d9
init testing version
Sep 11, 2024
d909332
resource file update
Sep 12, 2024
e3ba888
Update access_nucleovar.py
Sep 12, 2024
4dc030e
Update access_nucleovar.py
Sep 12, 2024
fa1a9b2
Update access_nucleovar.py
Sep 12, 2024
4831a9a
Update access_nucleovar.py
Sep 12, 2024
0c45651
Update access_nucleovar.py
Sep 12, 2024
ec82fdb
Merge branch 'develop' into feature/nucleovar_operator
Sep 12, 2024
8cd9fdb
Update access_nucleovar.py
Sep 12, 2024
e469ef6
Update access_nucleovar.py
Sep 12, 2024
3e2fc21
Update access_nucleovar.py
Sep 12, 2024
354d367
Update access_nucleovar.py
Sep 13, 2024
c82d0c4
Update access_nucleovar.py
Sep 13, 2024
77a1a56
working on dev
Oct 4, 2024
593baae
revert v1 changes
Oct 4, 2024
88ca87f
revert access init
Oct 4, 2024
8533d56
working submissions
Oct 21, 2024
3329a45
linting
Oct 21, 2024
1bf7c51
Merge branch 'develop' into feature/nucleovar_operator
Oct 21, 2024
5853822
linting and test update
Oct 21, 2024
f263844
Update test_nextflow_run.py
Oct 21, 2024
57fb7cd
Update access_nucleovar.py
Oct 21, 2024
bf841b8
updating resolvers
Oct 30, 2024
a18b2fd
remove log
Oct 30, 2024
d8dc854
linting
Oct 30, 2024
91a9bff
correcting nfcore template order
Oct 30, 2024
b8ec5b6
Merge branch 'feature/nucleovar_operator' of https://github.com/mskcc…
Oct 30, 2024
c8b31c6
adding reactive nfcore checkbox
Oct 30, 2024
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18 changes: 18 additions & 0 deletions runner/migrations/0062_pipeline_nfcore_template.py
Original file line number Diff line number Diff line change
@@ -0,0 +1,18 @@
# Generated by Django 2.2.28 on 2024-09-26 19:28

from django.db import migrations, models


class Migration(migrations.Migration):

dependencies = [
("runner", "0061_auto_20240820_1837"),
]

operations = [
migrations.AddField(
model_name="pipeline",
name="nfcore_template",
field=models.BooleanField(default=False),
),
]
1 change: 1 addition & 0 deletions runner/models.py
100644 → 100755
Original file line number Diff line number Diff line change
Expand Up @@ -75,6 +75,7 @@ class Pipeline(BaseModel):
tool_walltime = models.IntegerField(blank=True, null=True)
memlimit = models.CharField(blank=True, null=True, max_length=20)
config = models.CharField(blank=True, null=True, max_length=3000, default=None)
nfcore_template = models.BooleanField(default=False)

@property
def pipeline_link(self):
Expand Down
1 change: 1 addition & 0 deletions runner/operator/access/v2_1_0/nucleovar/__init__.py
Original file line number Diff line number Diff line change
@@ -0,0 +1 @@
from .access_nucleovar import NucleoVarOperator
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