Scheduled monthly dependency update for August #289

	name: test_uncollapsed_bam_generation
	on:
	push:
	paths-ignore:
	- 'docs/**'
	- '**.md'
	pull_request:
	paths-ignore:
	- 'docs/**'
	- '**.md'
	jobs:
	test_uncollapsed_bam_generation:
	runs-on: ${{ matrix.platform }}
	if: "!contains(github.event.head_commit.message, 'ci skip')"
	strategy:
	max-parallel: 1
	matrix:
	platform: [ubuntu-latest]
	python-version: [3.6]
	steps:
	- name: Checkout repo
	uses: actions/checkout@v2
	with:
	ref: ${{ github.head_ref }}
	submodules: recursive
	- name: Set up Python ${{ matrix.python-version }}
	uses: actions/setup-python@v2
	with:
	python-version: ${{ matrix.python-version }}
	- name : Set up NodeJS
	run: \|
	curl -o- https://raw.githubusercontent.com/nvm-sh/nvm/v0.37.2/install.sh \| bash
	export NVM_DIR="$HOME/.nvm"
	[ -s "$NVM_DIR/nvm.sh" ] && \. "$NVM_DIR/nvm.sh" # This loads nvm
	[ -s "$NVM_DIR/bash_completion" ] && \. "$NVM_DIR/bash_completion" # This loads nvm bash_completion
	nvm install node
	- name: Setup Docker
	uses: docker-practice/actions-setup-docker@master
	with:
	docker_channel: nightly
	# this value please see https://github.com/AkihiroSuda/moby-snapshot/releases
	docker_nightly_version: snapshot-20201109
	env:
	PLATFORM: ${{ matrix.platform }}
	- name: Login to GitHub Container Registry
	uses: docker/login-action@v1
	with:
	registry: ghcr.io
	username: ${{ github.repository_owner }}
	password: ${{ secrets.RS_PAT }}
	- name: Install Python dependencies
	run: \|
	python -m pip install --upgrade pip
	pip install tox tox-gh-actions
	- name: Test with tox
	id: run-tox
	run: tox -vv
	env:
	PLATFORM: ${{ matrix.platform }}

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