Merge branch 'release/1.3.0' #451
Workflow file for this run
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| name: test_uncollapsed_bam_generation | |
| on: | |
| push: | |
| paths-ignore: | |
| - 'docs/**' | |
| - '**.md' | |
| pull_request: | |
| paths-ignore: | |
| - 'docs/**' | |
| - '**.md' | |
| jobs: | |
| test_uncollapsed_bam_generation: | |
| runs-on: ${{ matrix.platform }} | |
| if: "!contains(github.event.head_commit.message, 'ci skip')" | |
| strategy: | |
| max-parallel: 1 | |
| matrix: | |
| platform: [ubuntu-latest] | |
| python-version: ['3.10'] | |
| steps: | |
| - name: Checkout repo | |
| uses: actions/checkout@v4 | |
| with: | |
| ref: ${{ github.head_ref }} | |
| submodules: recursive | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name : Set up NodeJS | |
| run: | | |
| curl -o- https://raw.githubusercontent.com/nvm-sh/nvm/v0.37.2/install.sh | bash | |
| export NVM_DIR="$HOME/.nvm" | |
| [ -s "$NVM_DIR/nvm.sh" ] && \. "$NVM_DIR/nvm.sh" # This loads nvm | |
| [ -s "$NVM_DIR/bash_completion" ] && \. "$NVM_DIR/bash_completion" # This loads nvm bash_completion | |
| nvm install node | |
| - name: Install Python dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install tox tox-gh-actions | |
| - name: Install Test data | |
| run: | | |
| bash install_data.sh | |
| - name: Test with tox | |
| id: run-tox | |
| run: tox -vv | |
| env: | |
| PLATFORM: ${{ matrix.platform }} |