merge_fastq

Package to merge multiple pair of pair-end fastq data

• Free software: Apache Software License 2.0
• Documentation: https://merge-fastq.readthedocs.io.

Features

• Given multiple pair-end fastq data merge them into single pair-end fastq w.r.t each READ1 and READ2

Usage

> merge_fastq --help

Usage: merge_fastq [OPTIONS]

Console script for merge_fastq.

Options:

-fp1, --fastq1 PATH
	Full path to gziped READ1 fastq files, can be specified multiple times for example: --fastq1 test_part1_R1.fastq.gz --fastq1 test_part2_R1.fastq.gz [required]
-fp2, --fastq2 PATH
	Full path to gziped READ2 fastq files, can be specified multiple times for example: --fastq2 test_part1_R2.fastq.gz --fastq2 test_part2_R2.fastq.gz [required]
-op, --output-path PATH
	Full path to write the output files (default: Current working directory)
-of1, --out-fastq1 TEXT
	Name of the merged output READ1 fastq file (default: merged_fastq_R1.fastq.gz)
-of2, --out-fastq2 TEXT
	Name of the merged output READ2 fastq file (default: merged_fastq_R2.fastq.gz)
--help	Show this message and exit.

Credits

This package was created with Cookiecutter and the audreyr/cookiecutter-pypackage project template.