Merge branch 'release/1.2.5' into develop #283
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| name: Pack CWL Files | |
| # Triggers the action on push or pull requests, | |
| # but only for the develop branch | |
| on: | |
| push: | |
| branches: [ develop ] | |
| pull_request: | |
| branches: [ develop ] | |
| jobs: | |
| pack_cwls: | |
| runs-on: macos-latest | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: [3.8.x, 3.9.x] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| submodules: recursive | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install cwltool | |
| run: | | |
| python -m pip install toil[cwl]==5.7.1 | |
| - name: Run cwltool --pack for all workflows | |
| run: | | |
| echo Removing old packed workflows | |
| rm -rf ./packed_workflows/* | |
| echo Packing CWL files... | |
| find . -name '*.cwl' ! -path '*__packed*' ! -path '*/command_line_tools/*' -type f -print0 -exec sh -c 'cwltool --pack $0 > ${0/.cwl/__packed.cwl}' {} \; | |
| - name: Validate packed workflows | |
| run: | | |
| echo Validating packed workflows... | |
| find . -name '*__packed.cwl' | xargs -I file cwltool --debug --validate file | |
| - uses: EndBug/[email protected] | |
| with: | |
| ref: ${{ github.head_ref }} | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} |