Merge branch 'main' of https://github.com/mrc-ide/YEP

mrc-ide · Jul 31, 2023 · d70c627 · d70c627
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 A package for running a dynamic SEIRV model of yellow fever, creating input data and processing output data.
 
-The package can also be used to fit values of epidemiological parameters of the model to different types of data on yellow fever burden in one or more regions.
+The package can also be used to:
 
-(This package is currently being overhauled.)
+-Generate datasets based on existing yellow fever epidemiological datasets (annual reported case data and seroprevalence survey results).
+-Estimate values of epidemiological parameters of the model and other parameters including vaccine efficacy and case reporting rates, based on epidemiological data on yellow fever burden from one or more regions.
+-Generate yellow fever burden data for multiple countries based on the approach used by the [Vaccine Impact Modelling Consortium] (https://www.vaccineimpact.org/).
+
+Preprint of paper currently being reviewed by Lancet Global Health detailing model and applications: https://papers.ssrn.com/sol3/papers.cfm?abstract_id=4469377
+
+Additional packages for use with this package:
+[YEPaux](https://github.com/mrc-ide/YEPaux]: Auxiliary functions for processing model output and parameter estimation results
+[YellowFeverDynamics](https://github.com/mrc-ide/YellowFeverDynamics): Alternate versions of the basic model and additional functions for outbreak risk estimation and response modelling
 
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diff --git a/index.md b/index.md
diff --git a/src/SEIRV_Model.o b/src/SEIRV_Model.o
diff --git a/src/YEP.dll b/src/YEP.dll
diff --git a/src/cpp11.o b/src/cpp11.o