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mrc-ide · Jun 19, 2024 · 86b694f · 86b694f
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diff --git a/404.html b/404.html
diff --git a/LICENSE-text.html b/LICENSE-text.html
diff --git a/articles/A1Introduction.html b/articles/A1Introduction.html
diff --git a/articles/A2Installation.html b/articles/A2Installation.html
diff --git a/articles/BWorkedExampleAModelRun.html b/articles/BWorkedExampleAModelRun.html
diff --git a/articles/BWorkedExampleBOutbreakRiskCalculation.html b/articles/BWorkedExampleBOutbreakRiskCalculation.html
diff --git a/articles/BWorkedExampleCEpiDatasetGenerate.html b/articles/BWorkedExampleCEpiDatasetGenerate.html
diff --git a/articles/BWorkedExampleDMCMC.html b/articles/BWorkedExampleDMCMC.html
diff --git a/articles/CGuideAInputs.html b/articles/CGuideAInputs.html
diff --git a/articles/CGuideBParametersEnvironment.html b/articles/CGuideBParametersEnvironment.html
diff --git a/articles/CGuideCModelResultsProcess.html b/articles/CGuideCModelResultsProcess.html
diff --git a/articles/CGuideDEpiDataGenerate.html b/articles/CGuideDEpiDataGenerate.html
diff --git a/articles/CGuideELikelihood.html b/articles/CGuideELikelihood.html
diff --git a/articles/index.html b/articles/index.html
diff --git a/authors.html b/authors.html
diff --git a/index.html b/index.html
diff --git a/pkgdown.yml b/pkgdown.yml
@@ -13,7 +13,7 @@ articles:
   CGuideCModelResultsProcess: CGuideCModelResultsProcess.html
   CGuideDEpiDataGenerate: CGuideDEpiDataGenerate.html
   CGuideELikelihood: CGuideELikelihood.html
-last_built: 2024-06-18T17:53Z
+last_built: 2024-06-19T11:08Z
 urls:
   reference: https://mrc-ide.github.io/YEP/reference
   article: https://mrc-ide.github.io/YEP/articles

diff --git a/reference/Generate_Dataset.html b/reference/Generate_Dataset.html
diff --git a/reference/MCMC.html b/reference/MCMC.html
diff --git a/reference/Model_Run.html b/reference/Model_Run.html
diff --git a/reference/Model_Run_Many_Reps.html b/reference/Model_Run_Many_Reps.html
diff --git a/reference/case_data_calculate.html b/reference/case_data_calculate.html
diff --git a/reference/case_data_calculate_multi.html b/reference/case_data_calculate_multi.html
diff --git a/reference/case_data_compare.html b/reference/case_data_compare.html
diff --git a/reference/create_input_data.html b/reference/create_input_data.html
diff --git a/reference/create_param_labels.html b/reference/create_param_labels.html
diff --git a/reference/imm_fraction_function.html b/reference/imm_fraction_function.html
diff --git a/reference/index.html b/reference/index.html
diff --git a/reference/input_data_check.html b/reference/input_data_check.html
diff --git a/reference/input_data_process.html b/reference/input_data_process.html
diff --git a/reference/input_data_truncate.html b/reference/input_data_truncate.html
diff --git a/reference/mcmc_FOI_R0_setup.html b/reference/mcmc_FOI_R0_setup.html
diff --git a/reference/mcmc_checks.html b/reference/mcmc_checks.html
diff --git a/reference/mcmc_prelim_fit.html b/reference/mcmc_prelim_fit.html
diff --git a/reference/param_calc_enviro.html b/reference/param_calc_enviro.html
diff --git a/reference/param_prop_setup.html b/reference/param_prop_setup.html
diff --git a/reference/parameter_setup.html b/reference/parameter_setup.html
diff --git a/reference/regions_breakdown.html b/reference/regions_breakdown.html