Issues installing hybpiper #118
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Hi @veronicamb, I was just typing a response and noticed that you've closed this issue. Did you find a solution? Here's my partially completed response, in case it's of any use: """ If so, you won't be able to install HybPiper from bioconda, as bioconda doesn't support ARM64 architecture or macOS yet (see e.g. here and here - looks like it might arrive Q3 2023...). I'll be maintaining the latest HybPiper versions on my conda channel (https://anaconda.org/chrisjackson-pellicle/hybpiper) for a while, but unfortunately I don't have access to an M1 Mac to build and test the HybPiper package. However, it's my understanding that you can install x86 conda packages on an M1 Mac, e.g. see here: https://towardsdatascience.com/how-to-manage-conda-environments-on-an-apple-silicon-m1-mac-1e29cb3bad12 Cheers, Chris |
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Hi Chris,
Thank you so much for writing to me! Yes, I did figure it out and you're
right, I was trying to install it on an M2 Mac.
My "solution" was to install it on an old intel mac and everything ran
smoothly.
This works for me because all I want is to be able to run the tutorial on
my computer so I can learn how to use it. Moving forward, I'll be running
hybpiper on our HPC, so everything will be fine.
thanks again for reaching out, I really appreciate it.
sincerely,
Veronica M. Bueno, Ph.D.
…On Thu, May 4, 2023 at 11:45 PM Chris Jackson ***@***.***> wrote:
Hi @veronicamb <https://github.com/veronicamb>,
I was just typing a response and noticed that you've closed this issue.
Did you find a solution? Here's my partially completeed response, in case
it's of any use:
"""
By the look of your current channel list, it appears as though you're
using a Mac with an M1 or M2 chip with ARM64 architecture - is that correct?
If so, you won't be able to install HybPiper from bioconda, as bioconda
doesn't support ARM64 architecture osX yet (see e.g. here
<conda/conda#11216> and here
<bioconda/bioconda-recipes#23454 (comment)>
- looks like it *might* arrive Q3 2023...).
I'll be maintaining the latest HybPiper versions on my conda channel (
https://anaconda.org/chrisjackson-pellicle/hybpiper) for a while, but
unfortunately I don't have access to an M1 Mac to build and test the
HybPiper package. However, it's my understanding that you can install x86
conda packages on an M1 Mac, e.g. see here:
https://towardsdatascience.com/how-to-manage-conda-environments-on-an-apple-silicon-m1-mac-1e29cb3bad12
""""
Cheers,
Chris
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I'm trying to install hybpiper but I keep getting the same "package not found" message.
I've tried installing it using conda and I get this message:
~ % conda install -c bioconda hybpiper
Collecting package metadata (current_repodata.json): done
Solving environment: failed with initial frozen solve. Retrying with flexible solve.
Collecting package metadata (repodata.json): done
Solving environment: failed with initial frozen solve. Retrying with flexible solve.
PackagesNotFoundError: The following packages are not available from current channels:
Current channels:
To search for alternate channels that may provide the conda package you're
looking for, navigate to
and use the search bar at the top of the page.
A similar message shows up when I try to install with mamba. I've tried changing python versions as well (from 3.10 to 3.9), but the issue persists. I'm not a bioinformatician, so I'll need a more detailed explanation, if possible.
thank you
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