Code

Build out MIC extraction template#495

Code

Merged

caufieldjh merged 21 commits intomainmonarch-initiative/ontogpt:mainfrom 492-expand-micronutrientyaml-to-support-disease-phenotype-biological-process-food-associationsmonarch-initiative/ontogpt:492-expand-micronutrientyaml-to-support-disease-phenotype-biological-process-food-associationsCopy head branch name to clipboardDec 20, 2024

+1,745-929

Commits

Commits on Dec 18, 2024

• Update poetry lock

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  b18f3cc

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• Rename micronutrient template to mic

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  af485d7

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• Revise MIC tempalate to extract nutrient to disease rels

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  880f6f7

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Commits on Dec 20, 2024

• Class name change; descriptions

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  c5aa925

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• Minor class name tweak

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  3d375cf

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• Add nutrient vs nutrient relationships

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  91383a1

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• Add nutrient to phenotype relationships

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  7b7e5ad

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• prompt tuning

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  c10af08

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• More prompt tuning for phenotypes

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  99cdb0f

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• Add NutrientToBiologicalProcessRelationship

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  e31787e

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• Minor prompt tuning

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  fcf2104

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• Add NutrientToHealthStatusRelationship

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  3c3c0ab

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• small fix for NutrientToBiologicalProcessRelationship

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  dfccd69

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• Tuning for nutrient_to_nutrient_relationships

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  5ebc50c

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• Tuning for nutrient_to_biological_process_relationships

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  96b8f44

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• Add NutrientToSourceRelationship

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  096fc3b

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• Comment out redundant nutrient_terms slot

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  295080f

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• First pass at reference extraction

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  faacb2e

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• Second pass at reference extraction

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  4ba63a2

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• Extracting full reflist isn't working. Commenting out

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  54a65ba

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• Tuning reference extraction

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  508f826

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