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pattern for disease caused by one of multiple genes #8173

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@sabrinatoro sabrinatoro commented Sep 17, 2024

Addresses #8082

@cmungall Could you please review this?
Is this what you had in mind? I know using "or" in logical definition is not great, but it is what would work for this (I think).

That being said, the logical definition using "or" in mondo-edit.obo looks unlike anything else in OBO. This makes me question whether what I did is correct. Screenshots below for convenience. Thank you!

Screenshot 2024-09-17 at 2 08 39 PM

Screenshot 2024-09-17 at 2 11 53 PM

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This isn't the correct way to do multivalued fields in dosdp. These were introduced here INCATools/dead_simple_owl_design_patterns#71. I will see if I can find some docs on how to use them. @matentzn may be able to help.

Note we can't represent unions in expressions, obo format, and union reasoning in Elk is incomplete

But why do we even need a logical definition here? I would focus on documenting the pattern, and only do logical definitions for really simple clear cases.

How often do we expect this? Surely in most cases the grouping will correspond to a union of gene-specific diseases (here a disjoint union is fine)

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