remove confidence annotation property (#7577)

* add query to rm confidence anno * remove other references to confidence property * fix merge conflicts and rm confidence prop for newly edited terms --------- Co-authored-by: Trish Whetzel <[email protected]>
monarch-initiative · Apr 11, 2024 · 20f3c85 · 20f3c85
1 parent 7063505
commit 20f3c85
Show file tree

Hide file tree

Showing 5 changed files with 15 additions and 5,364 deletions.
diff --git a/src/ontology/Makefile b/src/ontology/Makefile
@@ -196,7 +196,7 @@ ANN = annotate -V $(ONTURI)/releases/`date +%Y-%m-%d`/[email protected]
 GITHUB_ACTION = false
 
 filtered.obo: $(SRC)
-	perl -ne 'print unless (m@^xref: (Orphanet|OMIM|OMIMPS|DOID|EFO|NCIT|SCTID|MESH|UMLS|ICD10CM):@ && !(m@(obsoleteEquivalent|equivalentObsolete|equivalentTo|relatedTo|mondoIsNarrowerThanSource|directSiblingOf|mondoIsBroaderThanSource)@i))' $< | grep -v '^property_value: confidence' | grep -v '^property_value: excluded_subClassOf' | egrep -v '^synonym: .*EXCLUDE' | egrep -v 'relationship: disease_has_basis_in_dysfunction_of (hgnc|HGNC|NCBIGene):' > $@.tmp && mv $@.tmp $@
+	perl -ne 'print unless (m@^xref: (Orphanet|OMIM|OMIMPS|DOID|EFO|NCIT|SCTID|MESH|UMLS|ICD10CM):@ && !(m@(obsoleteEquivalent|equivalentObsolete|equivalentTo|relatedTo|mondoIsNarrowerThanSource|directSiblingOf|mondoIsBroaderThanSource)@i))' $< | grep -v '^property_value: excluded_subClassOf' | egrep -v '^synonym: .*EXCLUDE' | egrep -v 'relationship: disease_has_basis_in_dysfunction_of (hgnc|HGNC|NCBIGene):' > $@.tmp && mv $@.tmp $@
 	if [ $(GITHUB_ACTION) = false ]; then $(ROBOT) query -i $@ --use-graphs false \
 		--update ../sparql/update/delete-axiom-annotations.ru \
 		--update ../sparql/update/delete-axiom-annotations-by-prefix.ru \