Update Externally Provided Content #8

	name: Update Externally Provided Content

	on:
	# schedule:
	# - cron: '0 14 * * 1'
	workflow_dispatch:

	jobs:
	build:
	runs-on: ubuntu-latest
	container: obolibrary/odkfull:v1.5.2

	steps:
	- name: Checkout main branch
	uses: actions/checkout@v3
	with:
	ref: master

	- name: Update Externally Provided Content
	run: \|
	cd src/ontology
	make GITHUB_ACTION=true IMP=false PAT=false update-external-content-incl-rare -B

	- name: Run ontology QC checks
	env:
	DEFAULT_BRANCH: master
	run: cd src/ontology; make GITHUB_ACTION=true IMP=false PAT=false test -B
	continue-on-error: true # Allow QC to fail but continue

	- name: Create Pull Request
	uses: peter-evans/create-pull-request@v5
	with:
	branch-suffix: short-commit-hash
	labels: Automated
	body: "Update the externally managed content. This includes all content, including updates to the rare disease subsets."
	title: "Externally managed content update"
	base: ${{ github.head_ref }}
	branch: "externally_managed_content"
	token: ${{ secrets.GH_TOKEN }}
	reviewers: "twhetzel"

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