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17 Open 13 Closed
17 Open 13 Closed
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Issues list

There is no final output
#49 opened Jan 16, 2025 by wjq1981
Segmentation fault with hmm_flagger
#48 opened Jan 6, 2025 by jkfo002
4
Localization via hard link failed in hmm_flagger_end_to_end_with_mapping.wdl
#46 opened Dec 23, 2024 by is-the-biologist
3
Assertion `canonicalStart == max(trackReader->s, chunk->s)' failed.
#45 opened Dec 17, 2024 by tbenavi1
6
Segmentation fault with centromere annotation for bias detection
#44 opened Nov 5, 2024 by baozg
1
Cannot build docker container
#41 opened Sep 25, 2024 by GitEnricoNeko
Did Flagger also can run with ONT or CLR data?
#37 opened Aug 20, 2024 by baozg
1
Genomic Reference for Files in FLAGGER_HIFI_PROJECTED_SIMPLIFIED_BEDS/ Directories
#33 opened May 4, 2024 by NahyunKong
1
Could not localize, doesn't exist
#32 opened May 3, 2024 by tbenavi1
The most appropriate way to estimate sequence coverage
#29 opened Mar 5, 2024 by andosl
1
Flagger with sequencing with target enrichment?
#28 opened Feb 27, 2024 by MariBGO
1
Pipeline failing on call_stats step
#26 opened Sep 14, 2023 by soisa001
Updated files for CHM13-v2.0
#25 opened Sep 13, 2023 by wharvey31
Can I skip the step that incorporate the coverage biases in HSats?
#23 opened Jul 24, 2023 by ericgonzalezs
1
How does Flagger compare to QUAST and BUSCO?
#15 opened Jun 20, 2023 by jingydz
Install instructions
#12 opened May 9, 2023 by kiratalreja3
1
Add some new features to project_blocks.py
#1 opened Aug 5, 2022 by mobinasri
ProTip! Adding no:label will show everything without a label.