Update the publish.yml workflow for UV #851
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Python package | |
| on: | |
| push: | |
| branches: | |
| - master | |
| paths-ignore: | |
| - 'README.md' | |
| pull_request: | |
| paths-ignore: | |
| - 'README.md' | |
| # https://stackoverflow.com/a/72408109/6388696 | |
| # https://docs.github.com/en/actions/using-jobs/using-concurrency#example-using-concurrency-to-cancel-any-in-progress-job-or-run | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| linting: | |
| name: Run linting/pre-commit checks | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: actions/setup-python@v4 | |
| with: | |
| python-version: '3.10' | |
| - run: pip install "pre-commit<4.0.0" | |
| - run: pre-commit --version | |
| - run: pre-commit install | |
| - run: pre-commit run --all-files | |
| unit-tests: | |
| needs: [linting] | |
| runs-on: ${{ matrix.platform }} | |
| strategy: | |
| max-parallel: 4 | |
| matrix: | |
| platform: [ubuntu-latest, windows-latest, macos-latest] | |
| python-version: ['3.9', '3.10', '3.11', '3.12', '3.13'] | |
| env: | |
| PLATFORM: ${{ matrix.platform }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Install the latest version of uv | |
| uses: astral-sh/setup-uv@v3 | |
| with: | |
| version: "latest" | |
| enable-cache: true | |
| # https://github.com/astral-sh/setup-uv?tab=readme-ov-file#github-authentication-token | |
| github-token: ${{ secrets.GITHUB_TOKEN }} | |
| cache-suffix: ${{ matrix.python-version }} | |
| - name: Pin Python version to ${{ matrix.python-version }} | |
| run: uv python pin ${{ matrix.python-version }} | |
| - name: Install dependencies | |
| run: uv sync | |
| - name: Setup passwordless SSH access to localhost for tests | |
| # Adapted from https://stackoverflow.com/a/60367309/6388696 | |
| if: runner.os == 'Linux' | |
| run: | | |
| ssh-keygen -t ed25519 -f ~/.ssh/testkey -N '' | |
| cat > ~/.ssh/config <<EOF | |
| Host localhost | |
| User $USER | |
| HostName 127.0.0.1 | |
| IdentityFile ~/.ssh/testkey | |
| EOF | |
| echo -n 'from="127.0.0.1" ' | cat - ~/.ssh/testkey.pub > ~/.ssh/authorized_keys | |
| chmod og-rw ~ | |
| ssh -o 'StrictHostKeyChecking no' localhost id | |
| - name: Test with pytest | |
| run: uv run pytest --cov=milatools --cov-report=xml --cov-append | |
| - name: Store coverage report as an artifact | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: coverage-reports-unit-${{ matrix.platform }}-${{ matrix.python-version }} | |
| path: ./coverage.xml | |
| real-slurm-integration-tests: | |
| name: integration tests with a real SLURM cluster | |
| needs: [unit-tests] | |
| strategy: | |
| max-parallel: 1 | |
| matrix: | |
| # TODO: We should ideally also run this with Windows/Mac clients and a Linux | |
| # server. Unsure how to set that up with GitHub Actions though. | |
| python-version: ['3.11'] | |
| cluster: ['mila'] | |
| uses: ./.github/workflows/testing.yml | |
| with: | |
| cluster: ${{ matrix.cluster }} | |
| python-version: ${{ matrix.python-version }} | |
| timeout-minutes: 30 | |
| # https://about.codecov.io/blog/uploading-code-coverage-in-a-separate-job-on-github-actions/ | |
| upload-coverage-codecov: | |
| needs: [real-slurm-integration-tests] | |
| runs-on: ubuntu-latest | |
| name: Upload coverage reports to Codecov | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| - name: Download artifacts | |
| uses: actions/download-artifact@v4 | |
| with: | |
| pattern: coverage-reports-* | |
| merge-multiple: false | |
| # download all the artifacts in this directory (each .coverage.xml will be in a subdirectory) | |
| # Next step if this doesn't work would be to give the coverage files a unique name and use merge-multiple: true | |
| path: coverage_reports | |
| - name: Upload coverage reports to Codecov | |
| uses: codecov/codecov-action@v5 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| # file: ./coverage.xml # Search for all coverage files from each workflow. | |
| # flags: integrationtests | |
| # env_vars: PLATFORM,PYTHON | |
| # name: codecov-umbrella | |
| directory: coverage_reports | |
| fail_ci_if_error: true |