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@microbiomedata

National Microbiome Data Collaborative

National Microbiome Data Collaborative

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  1. nmdc-schema nmdc-schema Public

    National Microbiome Data Collaborative (NMDC) unified data model

    Python 29 8

  2. NMDC_documentation NMDC_documentation Public

    Document workflows, schemas, and portal

    2 3

Repositories

Showing 10 of 82 repositories
  • nmdc_mass_spectrometry_metadata_generation Public

    Mass spectrometry metadata generation

    microbiomedata/nmdc_mass_spectrometry_metadata_generation’s past year of commit activity
    Python 0 0 0 0 Updated Feb 3, 2025
  • nmdc_notebook_tools Public

    A library designed to simplify various research tasks for users looking to leverage the NMDC (National Microbiome Data Collaborative) APIs. The library provides a collection of general-purpose functions that facilitate easy access, manipulation, and analysis of microbiome data.

    microbiomedata/nmdc_notebook_tools’s past year of commit activity
    Python 2 0 1 0 Updated Feb 3, 2025
  • geoloc-tools Public
    microbiomedata/geoloc-tools’s past year of commit activity
    Python 0 0 0 0 Updated Feb 3, 2025
  • nmdc_automation Public

    Prototype automation

    microbiomedata/nmdc_automation’s past year of commit activity
    Python 2 2 43 4 Updated Feb 3, 2025
  • external-metadata-awareness Public

    Tools for fetching and processing external schemas, ontologies and metadata records. Includes value set maintenance and some GitHub org exploration.

    microbiomedata/external-metadata-awareness’s past year of commit activity
    Jupyter Notebook 0 0 15 1 Updated Feb 3, 2025
  • nmdc-field-notes Public

    Mobile app for metadata collection on the go

    microbiomedata/nmdc-field-notes’s past year of commit activity
    TypeScript 2 0 27 0 Updated Feb 2, 2025
  • nmdc_notebooks Public

    Jupyter Notebooks demonstrating R and Python-based access to NMDC metadata and data

    microbiomedata/nmdc_notebooks’s past year of commit activity
    Jupyter Notebook 5 CC0-1.0 0 14 3 Updated Feb 2, 2025
  • refscan Public

    Command-line program that scans NMDC database for referential integrity violations

    microbiomedata/refscan’s past year of commit activity
    Python 2 0 3 0 Updated Feb 2, 2025
  • nmdc-runtime Public

    Runtime system for NMDC data management and orchestration

    microbiomedata/nmdc-runtime’s past year of commit activity
    HTML 7 5 109 (2 issues need help) 15 Updated Feb 1, 2025
  • nmdc-schema Public

    National Microbiome Data Collaborative (NMDC) unified data model

    microbiomedata/nmdc-schema’s past year of commit activity
    Python 29 CC0-1.0 8 364 (1 issue needs help) 8 Updated Feb 1, 2025
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