rm test train inference config_optimizier + modif test.yml #720
Workflow file for this run
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| # This workflow will install Python dependencies, run tests and lint with a single version of Python | |
| # For more information see: https://docs.github.com/en/actions/automating-builds-and-tests/building-and-testing-python | |
| name: Tests | |
| on: | |
| push: | |
| branches: [ "main" ] | |
| pull_request: | |
| branches: [ "main" ] | |
| permissions: | |
| contents: read | |
| jobs: | |
| tests: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Get python version from env.yaml | |
| id: python_version | |
| run: echo PYTHON_VERS=$(cat env.yaml | grep python= | sed 's/.*python=\([0-9]\.[0-9]*\.[0-9]*\).*/\1/') >> $GITHUB_OUTPUT | |
| - name: Set up Python ${{ steps.python_version.outputs.PYTHON_VERS }} | |
| uses: actions/setup-python@v3 | |
| with: | |
| python-version: "${{ steps.python_version.outputs.PYTHON_VERS }}" | |
| - name: Get pytorch version from env.yaml | |
| id: pytorch_version | |
| run: echo PYTORCH_VERS=$(cat env.yaml | grep torch== | sed 's/.*torch==\(.*\)/\1/') >> $GITHUB_OUTPUT | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install -r requirements.txt \ | |
| torch==${{ steps.pytorch_version.outputs.PYTORCH_VERS }} | |
| pip install -r requirements_lint.txt | |
| pip install --editable . | |
| - name: Lint | |
| run: | | |
| ./lint.sh . | |
| - name: Integration Test with pytest | |
| run: | | |
| export PY4CAST_ROOTDIR=`pwd` | |
| coverage run -p -m pytest tests/ | |
| coverage run -p bin/main.py fit --config config/CLI/trainer.yaml --config config/CLI/dataset/dummy.yaml --config config/CLI/model/unetrpp.yaml --trainer.fast_dev_run True | |
| coverage run -p bin/main.py fit --config config/CLI/trainer.yaml --config config/CLI/dataset/dummy.yaml --config config/CLI/model/unetrpp.yaml --trainer.max_epochs 1 --data.batch_size 1 --trainer.limit_train_batches 1 --trainer.logger.version version_test | |
| coverage run -p bin/main.py fit --config config/CLI/trainer.yaml --config config/CLI/dataset/dummy.yaml --config config/CLI/model/unetrpp.yaml --trainer.max_epochs 1 --data.batch_size 1 --trainer.limit_train_batches 1 --ckpt_path /home/runner/work/py4cast/py4cast/lightning_logs/version_test/checkpoints/last.ckpt | |
| coverage run -p bin/main.py test --config config/CLI/trainer.yaml --config config/CLI/dataset/dummy.yaml --config config/CLI/model/unetrpp.yaml --trainer.max_epochs 1 --data.batch_size 1 --trainer.limit_train_batches 1 --ckpt_path /home/runner/work/py4cast/py4cast/lightning_logs/version_test/checkpoints/last.ckpt | |
| coverage run -p bin/main.py predict --config config/CLI/trainer.yaml --config config/CLI/dataset/dummy.yaml --config config/CLI/model/unetrpp.yaml --trainer.max_epochs 1 --data.batch_size 1 --trainer.limit_train_batches 1 --ckpt_path /home/runner/work/py4cast/py4cast/lightning_logs/version_test/checkpoints/last.ckpt | |
| coverage combine | |
| coverage report --ignore-errors --fail-under=60 |