name change

metagenomics · Apr 5, 2024 · eec5a49 · eec5a49
1 parent e67ed9e
commit eec5a49
Showing 1 changed file with 13 additions and 13 deletions.
diff --git a/.github/workflows/python-app.yml b/.github/workflows/python-app.yml
@@ -30,7 +30,7 @@ jobs:
         python -m pip install .
     - name: Download webin-cli
       run: |
-        synum download_webin
+        submg download_webin
     - name: Lint with flake8
       run: |
         # stop the build if there are Python syntax errors or undefined names
@@ -46,7 +46,7 @@ jobs:
         CFG=01_samples_reads_assembly_bins_mags.yaml
         RANDOM_STR=$(tr -dc 'A-Za-z0-9' </dev/urandom | head -c 5)
         sed -i "s/idx00/${RANDOM_STR}/g" "$CFG"
-        synum submit \
+        submg submit \
           --config $CFG \
           --staging_dir example01/staging \
           --logging_dir example01/logging \
@@ -64,7 +64,7 @@ jobs:
         CFG=02_samples_reads_assembly_bins.yaml
         RANDOM_STR=$(tr -dc 'A-Za-z0-9' </dev/urandom | head -c 5)
         sed -i "s/idx00/${RANDOM_STR}/g" "$CFG"
-        synum submit \
+        submg submit \
           --config $CFG \
           --staging_dir example02/staging \
           --logging_dir example02/logging \
@@ -81,7 +81,7 @@ jobs:
         CFG=03_samples_reads_assembly.yaml
         RANDOM_STR=$(tr -dc 'A-Za-z0-9' </dev/urandom | head -c 5)
         sed -i "s/idx00/${RANDOM_STR}/g" "$CFG"
-        synum submit \
+        submg submit \
           --config $CFG \
           --staging_dir example03/staging \
           --logging_dir example03/logging \
@@ -97,7 +97,7 @@ jobs:
         CFG=04_reads_assembly_bins_mags.yaml
         RANDOM_STR=$(tr -dc 'A-Za-z0-9' </dev/urandom | head -c 5)
         sed -i "s/idx00/${RANDOM_STR}/g" "$CFG"
-        synum submit \
+        submg submit \
           --config $CFG \
           --staging_dir example04/staging \
           --logging_dir example04/logging \
@@ -114,7 +114,7 @@ jobs:
         CFG=05_reads_assembly_bins.yaml
         RANDOM_STR=$(tr -dc 'A-Za-z0-9' </dev/urandom | head -c 5)
         sed -i "s/idx00/${RANDOM_STR}/g" "$CFG"
-        synum submit \
+        submg submit \
           --config $CFG \
           --staging_dir example05/staging \
           --logging_dir example05/logging \
@@ -130,7 +130,7 @@ jobs:
         CFG=06_reads_assembly.yaml
         RANDOM_STR=$(tr -dc 'A-Za-z0-9' </dev/urandom | head -c 5)
         sed -i "s/idx00/${RANDOM_STR}/g" "$CFG"
-        synum submit \
+        submg submit \
           --config $CFG \
           --staging_dir example06/staging \
           --logging_dir example06/logging \
@@ -145,7 +145,7 @@ jobs:
         CFG=07_assembly_bins_mags.yaml
         RANDOM_STR=$(tr -dc 'A-Za-z0-9' </dev/urandom | head -c 5)
         sed -i "s/idx00/${RANDOM_STR}/g" "$CFG"
-        synum submit \
+        submg submit \
           --config $CFG \
           --staging_dir example07/staging \
           --logging_dir example07/logging \
@@ -161,7 +161,7 @@ jobs:
         CFG=08_assembly_bins.yaml
         RANDOM_STR=$(tr -dc 'A-Za-z0-9' </dev/urandom | head -c 5)
         sed -i "s/idx00/${RANDOM_STR}/g" "$CFG"
-        synum submit \
+        submg submit \
           --config $CFG \
           --staging_dir example08/staging \
           --logging_dir example08/logging \
@@ -176,7 +176,7 @@ jobs:
         CFG=09_assembly.yaml
         RANDOM_STR=$(tr -dc 'A-Za-z0-9' </dev/urandom | head -c 5)
         sed -i "s/idx00/${RANDOM_STR}/g" "$CFG"
-        synum submit \
+        submg submit \
           --config $CFG \
           --staging_dir example09/staging \
           --logging_dir example09/logging \
@@ -190,7 +190,7 @@ jobs:
         CFG=10_bins_mags.yaml
         RANDOM_STR=$(tr -dc 'A-Za-z0-9' </dev/urandom | head -c 5)
         sed -i "s/idx00/${RANDOM_STR}/g" "$CFG"
-        synum submit \
+        submg submit \
           --config $CFG \
           --staging_dir example10/staging \
           --logging_dir example10/logging \
@@ -205,7 +205,7 @@ jobs:
         CFG=11_bins.yaml
         RANDOM_STR=$(tr -dc 'A-Za-z0-9' </dev/urandom | head -c 5)
         sed -i "s/idx00/${RANDOM_STR}/g" "$CFG"
-        synum submit \
+        submg submit \
           --config $CFG \
           --staging_dir example11/staging \
           --logging_dir example11/logging \
@@ -219,7 +219,7 @@ jobs:
         CFG=12_mags.yaml
         RANDOM_STR=$(tr -dc 'A-Za-z0-9' </dev/urandom | head -c 5)
         sed -i "s/idx00/${RANDOM_STR}/g" "$CFG"
-        synum submit \
+        submg submit \
           --config $CFG \
           --staging_dir example12/staging \
           --logging_dir example12/logging \