v2.0.4

Fixes #175

v2.0.3

bug fixes with taxonomy thanks to @jmtsuji

Small bug fixes

v2.0.2

v 2.02

v2.0.1

Changelog:

• New API
• on the fly install of conda environments and databases
• Updated docs
• Metagenomic binning with metabat, maxbin, DAS Tool
• Use scaffolds when using spades
• Build gene catalog of genes from MAGs with linclust
• Annotate with eggNOG mapper
• Taxonomic classification with CAT

Road map:

• Use genome properties to get pathways
• Combine unbinned contigs and add genes to gene catalog
• replace dynamic snakemake arguments with checkpoints

v1.0.35

v1.0.35

v1.0.34

• added support for spades k
• corrected number of mapping reads to an assembly

v1.0.33

Compatible with snakemake v5, spades v3.12

v1.0.32

• adds reports to python package

Bug fixes in annotate and assembly protocols

• fixes bug in command line for featureCounts
• fixes bug when using atlas annotate without fastqs

v1.0.20

• bug fixes where assembly was only using SE reads
• updates to checkm where databases are now downloaded separately