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no full test
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SilasK committed Oct 4, 2023
1 parent 41b8ae7 commit e98bb38
Showing 1 changed file with 42 additions and 42 deletions.
84 changes: 42 additions & 42 deletions .github/workflows/python-package-conda.yml
Original file line number Diff line number Diff line change
Expand Up @@ -170,46 +170,46 @@ jobs:



full-test:
runs-on: ubuntu-latest
needs: build-and-dryrun
strategy:
max-parallel: 1
env:
N_THREADS: 2
MEM: 3

steps:
- name: Checkout
uses: actions/[email protected]

- uses: mamba-org/setup-micromamba@v1
with:
environment-file: atlasenv.yml
environment-name: atlasenv
cache-environment-key: atlasenv-


- name: Install atlas
run: |
python -m pip install . --no-deps -vv
atlas --help
# - name: Clone Example Data Repository
# run: git clone https://github.com/metagenome-atlas/example_data.git
# full-test:
# runs-on: ubuntu-latest
# needs: build-and-dryrun
# strategy:
# max-parallel: 1
# env:
# N_THREADS: 2
# MEM: 3

# steps:
# - name: Checkout
# uses: actions/[email protected]

# - uses: mamba-org/setup-micromamba@v1
# with:
# environment-file: atlasenv.yml
# environment-name: atlasenv
# cache-environment-key: atlasenv-


# - name: Install atlas
# run: |
# python -m pip install . --no-deps -vv
# atlas --help

# # - name: Clone Example Data Repository
# # run: git clone https://github.com/metagenome-atlas/example_data.git

- name: Run Test
run: |
test/test_ci.sh --resources mem=$MEM java_mem=$MEM --jobs=$N_THREADS --restart-times=2
- name: Store Logs
uses: actions/upload-artifact@v2
with:
name: logs
path: test_ci/logs

- name: Store Sample Logs
uses: actions/upload-artifact@v2
with:
name: sample_logs
path: test_ci/Streptococcus/logs
# - name: Run Test
# run: |
# test/test_ci.sh --resources mem=$MEM java_mem=$MEM --jobs=$N_THREADS --restart-times=2

# - name: Store Logs
# uses: actions/upload-artifact@v2
# with:
# name: logs
# path: test_ci/logs

# - name: Store Sample Logs
# uses: actions/upload-artifact@v2
# with:
# name: sample_logs
# path: test_ci/Streptococcus/logs

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