corrected symlink to tmp file

metagenome-atlas · Jun 6, 2018 · 502d0cb · 502d0cb
1 parent 4a1b03b
commit 502d0cb
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/atlas/rules/assemble.snakefile b/atlas/rules/assemble.snakefile
@@ -429,7 +429,7 @@ if config['filter_contigs']:
             fasta = "{sample}/assembly/{sample}_prefilter_contigs.fasta",
             covstats = "{sample}/assembly/contig_stats/prefilter_coverage_stats.txt"
         output:
-            fasta = temp("{sample}/assembly/{sample}_final_contigs.fasta"),
+            fasta = "{sample}/assembly/{sample}_final_contigs.fasta",
             removed_names = "{sample}/assembly/{sample}_discarded_contigs.fasta"
         params:
             minc = config.get("minimum_average_coverage", MINIMUM_AVERAGE_COVERAGE),