Releases: mdshw5/pyfaidx
Releases · mdshw5/pyfaidx
v0.3.4
v0.3.3
New in version 0.3.3:
- --split-files option writes each returned sequence to an individual
file. Names are generated based on the sequence name and region
coordinates. - --stats option prints the name and sequence length for each entry,
suitable for use as a UCSC-style
chrom.sizes
file. - Sequence longname attribute allows access to "chr:start-end
(complement)" formatted names
v0.3.2
v0.3.1
v0.3.0
v0.2.9
v0.2.8
v0.2.7
v0.2.6
New in version 0.2.6:
- Faidx no longer has raw_index attribute or rebuild_index method
(reduce memory footprint) - Faidx index memory usage decreased by 31-40%
- .fai creation is streaming, performance increase for very large
indices - Possible speed regression when performing many small queries using
Fasta class
v0.2.5
New in version 0.2.5:
- Fasta and Faidx can take default-seq in addition to as_raw,
key_function, and strict_bounds parameters. - Fixed issue #20
- Faidx has attribute raw_index which is a list representing the fai
file. - Faidx has rebuild_index and write_fai functions for building and
writing raw_index to file. - Extra test cases, and test cases against Biopython SeqIO