Checking graph files

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Isaac Turner edited this page Jul 28, 2014 · 1 revision

usage: ctx31 check [options] <graph.ctx>
  Load a graph into memory along with any path files to check they are valid.

  Options:
   -m <mem>       Memory to use
   -n <kmers>     Number of hash table entries (e.g. 1G ~ 1 billion)
   -p <in.ctp>    Load paths
   --noedgecheck  Don't check kmer edges

Mostly used for debugging file corruption and bugs.