Merge pull request #18 from mcflugen/mcflugen/update-repo

Update repository

.coveragerc

@@ -1,3 +1,3 @@
 [run]
-omit = 
+omit =
   */_version.py

.github/workflows/changelog.yml

@@ -0,0 +1,28 @@
+name: changelog
+
+on:
+  pull_request:
+    types: [labeled, unlabeled, opened, reopened, synchronize]
+
+permissions:
+  contents: read
+
+jobs:
+  check-changelog-entry:
+    name: changelog entry
+    runs-on: ubuntu-latest
+
+    steps:
+      - uses: actions/checkout@v3
+        with:
+          # `towncrier check` runs `git diff --name-only origin/main...`, which
+          # needs a non-shallow clone.
+          fetch-depth: 0
+
+      - name: Check changelog
+        if: contains(github.event.pull_request.labels.*.name, 'skip news') != true
+        run: |
+          if ! pipx run towncrier check --compare-with origin/${{ github.base_ref }}; then
+          echo "Please see https://landlab.readthedocs.io/en/master/development/contribution/index.html?highlight=towncrier#news-entries for guidance."
+            false
+          fi

.github/workflows/lint.yml

@@ -0,0 +1,27 @@
+name: Lint
+
+on: [push, pull_request]
+
+jobs:
+
+  lint:
+    name: Check for lint
+    # We want to run on external PRs, but not on our own internal PRs as they'll be run
+    # by the push to the branch. Without this if check, checks are duplicated since
+    # internal PRs match both the push and pull_request events.
+    if:
+      github.event_name == 'push' || github.event.pull_request.head.repo.full_name !=
+      github.repository
+
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v3
+      - name: Set up Python 3.11
+        uses: actions/setup-python@v4
+        with:
+          python-version: 3.11
+
+      - name: Lint
+        run: |
+          pip install nox
+          nox -s lint -- --no-skip

.github/workflows/prerelease.yml

@@ -0,0 +1,46 @@
+name: TestPyPI
+
+on:
+  push:
+    tags:
+      - 'v[0-9]+.[0-9]+.[0-9]+[ab][0-9]+'
+
+env:
+  TWINE_USERNAME: __token__
+  TWINE_PASSWORD: ${{ secrets.TEST_PYPI_API_TOKEN }}
+  TWINE_REPOSITORY_URL: 'https://test.pypi.org/legacy/'
+
+jobs:
+  build-and-publish:
+    name: Build and publish to TestPyPI
+    runs-on: ubuntu-latest
+
+    defaults:
+      run:
+        shell: bash -l {0}
+
+    strategy:
+      fail-fast: false
+
+    steps:
+      - uses: actions/checkout@v3
+      - name: Set up Python 3.9
+        uses: actions/setup-python@v4
+        with:
+          python-version: "3.9"
+
+      - name: Install twine
+        run: |
+          pip install --upgrade pip wheel setuptools
+          pip install twine
+          python --version
+          pip --version
+          twine --version
+
+      - name: Create source distribution
+        run: |
+          python setup.py sdist --dist-dir wheelhouse
+
+      - name: Upload source distribution
+        run: |
+          twine upload --skip-existing wheelhouse/*.tar.gz

.github/workflows/release.yml

@@ -0,0 +1,46 @@
+name: PyPI
+
+on:
+  push:
+    tags:
+      - 'v[0-9]+.[0-9]+.[0-9]+'
+      - '!v[0-9]+.[0-9]+.[0-9]+[ab][0-9]+'
+
+env:
+  TWINE_USERNAME: __token__
+  TWINE_PASSWORD: ${{ secrets.PYPI_API_TOKEN }}
+
+jobs:
+  build-and-publish:
+    name: Build and publish to PyPI
+    runs-on: ubuntu-latest
+
+    defaults:
+      run:
+        shell: bash -l {0}
+
+    strategy:
+      fail-fast: false
+
+    steps:
+      - uses: actions/checkout@v3
+      - name: Set up Python 3.11
+        uses: actions/setup-python@v4
+        with:
+          python-version: "3.11"
+
+      - name: Install twine
+        run: |
+          pip install --upgrade pip wheel setuptools
+          pip install twine
+          python --version
+          pip --version
+          twine --version
+
+      - name: Create source distribution
+        run: |
+          python setup.py sdist --dist-dir wheelhouse
+
+      - name: Upload source distribution
+        run: |
+          twine upload --skip-existing wheelhouse/*.tar.gz

.github/workflows/test.yml

@@ -0,0 +1,65 @@
+name: Test
+
+on: [push, pull_request]
+
+jobs:
+  build-and-test:
+    name: Run the tests
+    # We want to run on external PRs, but not on our own internal PRs as they'll be run
+    # by the push to the branch. Without this if check, checks are duplicated since
+    # internal PRs match both the push and pull_request events.
+    if:
+      github.event_name == 'push' || github.event.pull_request.head.repo.full_name !=
+      github.repository
+
+    runs-on: ${{ matrix.os }}
+
+    defaults:
+      run:
+        shell: bash -l {0}
+
+    strategy:
+      matrix:
+        os: [ubuntu-latest, macos-latest, windows-latest]
+        python-version: ["3.9", "3.10", "3.11"]
+
+    steps:
+      - uses: actions/checkout@v3
+
+      - uses: conda-incubator/setup-miniconda@v2
+        with:
+          auto-update-conda: true
+          python-version: ${{ matrix.python-version }}
+          channels: conda-forge
+          channel-priority: true
+
+      - name: Show conda installation info
+        run: |
+          conda install mamba
+          pip install nox
+          conda info
+          conda list
+
+      - name: Test
+        env:
+          HYPOTHESIS_PROFILE: "ci"
+        run: |
+          nox -s test
+
+      - name: Coveralls
+        if: matrix.os == 'ubuntu-latest'
+        uses: AndreMiras/coveralls-python-action@develop
+        with:
+          parallel: true
+          flag-name: py${{ matrix.python-version }}-${{ matrix.os }}-${{ matrix.pytest-marker }}
+          debug: true
+
+  coveralls_finish:
+    needs: build-and-test
+    runs-on: ubuntu-latest
+    steps:
+      - name: Coveralls Finished
+        uses: AndreMiras/coveralls-python-action@develop
+        with:
+          parallel-finished: true
+          debug: true

.pre-commit-config.yaml

@@ -0,0 +1,112 @@
+repos:
+- repo: https://github.com/psf/black
+  rev: 23.3.0
+  hooks:
+  - id: black
+    name: black
+    description: "Black: The uncompromising Python code formatter"
+    entry: black
+    language: python
+    language_version: python3
+    minimum_pre_commit_version: 2.9.2
+    require_serial: true
+    types_or: [python, pyi]
+  - id: black-jupyter
+    name: black-jupyter
+    description:
+      "Black: The uncompromising Python code formatter (with Jupyter Notebook support)"
+    entry: black
+    language: python
+    minimum_pre_commit_version: 2.9.2
+    require_serial: true
+    types_or: [python, pyi, jupyter]
+    additional_dependencies: [".[jupyter]"]
+
+- repo: https://github.com/pycqa/flake8
+  rev: 6.0.0
+  hooks:
+  - id: flake8
+    additional_dependencies:
+    - flake8-bugbear
+    - flake8-comprehensions
+    - flake8-simplify
+
+- repo: https://github.com/nbQA-dev/nbQA
+  rev: 1.7.0
+  hooks:
+    - id: nbqa-pyupgrade
+      args: ["--py39-plus"]
+    - id: nbqa-isort
+    - id: nbqa-flake8
+      args: ["--extend-ignore=E402"]
+      exclude: |
+          (?x)^(
+              notebooks/tutorials/making_components/making_components.ipynb
+          )
+
+- repo: https://github.com/kynan/nbstripout
+  rev: 0.6.1
+  hooks:
+    - id: nbstripout
+      description: Strip output from jupyter notebooks
+      args: [--drop-empty-cells]
+
+- repo: https://github.com/asottile/pyupgrade
+  rev: v3.3.1
+  hooks:
+  - id: pyupgrade
+    args: [--py39-plus]
+
+- repo: https://github.com/PyCQA/isort
+  rev: 5.12.0
+  hooks:
+  - id: isort
+    files: \.py$
+
+- repo: https://github.com/pre-commit/pre-commit-hooks
+  rev: v4.4.0
+  hooks:
+    - id: check-builtin-literals
+    - id: check-added-large-files
+    - id: check-case-conflict
+    - id: check-toml
+    - id: check-yaml
+    - id: debug-statements
+    - id: end-of-file-fixer
+    - id: forbid-new-submodules
+    - id: mixed-line-ending
+    - id: trailing-whitespace
+
+- repo: https://github.com/regebro/pyroma
+  rev: "4.2"
+  hooks:
+  - id: pyroma
+    args: ["-d", "--min=10", "."]
+    additional_dependencies:
+    - numpy
+    - cython
+
+- repo: https://github.com/mgedmin/check-manifest
+  rev: "0.49"
+  hooks:
+  - id: check-manifest
+    args: ["--ignore=.nox,build", "--no-build-isolation"]
+    additional_dependencies:
+    - numpy
+    - cython~=3.0.0b3
+
+- repo: https://github.com/PyCQA/pydocstyle
+  rev: 6.1.1
+  hooks:
+  - id: pydocstyle
+    files: landlab/.*\.py$
+    args:
+    - --convention=numpy
+    - --add-select=D417
+    additional_dependencies: [".[toml]"]
+
+- repo: https://github.com/pre-commit/mirrors-mypy
+  rev: v0.982
+  hooks:
+  - id: mypy
+    additional_dependencies: [types-all]