Code

bowtie2 build fix#1080

Code

Merged

katsikora merged 78 commits intodevelopmaxplanck-ie/snakepipes:developfrom KSmaxplanck-ie/snakepipes:KSCopy head branch name to clipboardDec 20, 2024

+258-190

Commits

Commits on Sep 12, 2024

• bowtie2 build fix

  

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  3014b75

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Commits on Nov 15, 2024

• Merge branch 'develop' into KS

  katsikora

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  cd44eb8

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• CSAW changes

  

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  4b2944e

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• fix

  

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  12f29d0

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• fix

  

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  83a31ce

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• fix

  

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  70925ac

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• fix

  

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• fix

  

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  b21de8d

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• fix

  

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  8388496

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Commits on Nov 18, 2024

• bam filtering mrnaseq

  

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  d779c64

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• fix

  

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  5951040

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• fix

  

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  4f82236

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• fix linkbam

  

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  d8f8e44

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• mq string

  

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  3e6c010

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• wgbs

  

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  92081f4

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• fix multiqc

  

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  a04bc52

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Commits on Nov 19, 2024

• fix

  

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  1fb1870

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• pytest

  

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  5849acd

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• fix

  

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  f230897

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Commits on Nov 21, 2024

• fix

  

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  b3cb968

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• fix

  

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  8ae73a8

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Commits on Nov 22, 2024

• fix

  

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  7b2b6e2

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• multiqc

  

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  f00b7ea

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• fix

  

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  8151385

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• fix

  

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• wgbs

  

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• wgbs

  

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• wgbs

  

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  90d1a5e

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Commits on Nov 28, 2024

• fix

  

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  e7ff819

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• fix wgbs

  

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  eb89ab3

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• fix

  

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  6d66747

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• fix

  

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  c49aa33

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Commits on Nov 29, 2024

• fix

  

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  8bae9f4

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• fix

  

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  1303c00

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• fix

  

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  3f3fd4a

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• fix

  

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  7fdd87b

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• does this work

  

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  06b0fca

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Commits on Dec 2, 2024

• fix salmon

  

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  8b26004

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• fix

  

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  3c4b764

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• pytest

  

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• test checkpoint

  

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• sleuth

  

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Commits on Dec 3, 2024

• fixes sleuth

  

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  cf96962

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• sleuth fix

  

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  ac13752

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• fix deseq2 salmon

  

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  e3fc37c

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Commits on Dec 16, 2024

• fix

  

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  4db093e

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Commits on Dec 19, 2024

• fix

  

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• test dag

  

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Commits on Dec 20, 2024

• test dag

  

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