Code

Allelic frombam#1003

Code

Merged

katsikora merged 24 commits intodevelopmaxplanck-ie/snakepipes:developfrom allelic_frombammaxplanck-ie/snakepipes:allelic_frombamCopy head branch name to clipboardApr 10, 2024

+168-114

Commits

Commits on Apr 8, 2024

• added allelic-counting mode to mRNAseq

  

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  6a2073e

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• test da

  

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  f5ff941

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Commits on Apr 9, 2024

• quotes

  

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  57e0cd4

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• quotes

  

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  67926b8

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• quotes

  

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  f4dc7ae

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• get samples from bam suffix

  

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  6fe56df

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• fix

  

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  f7a3cdb

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• dot

  

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  b23d850

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• link bam

  

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  85f2299

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• pipeline

  

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  94c47ea

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• test dag

  

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  d4f7d44

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• deseq2

  

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  9eeb65d

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• rm nonallelic deeptools qc

  

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  013a780

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• multiqc

  

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  3aadc6e

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• rm dpTqc

  

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  2ff14b4

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• test dag

  

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  8cfe3ce

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• News.rst and documentation

  

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  e221ebd

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• flake

  

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  6e93d28

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• fix aligner for multiqc

  

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  209c2bf

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• fix deseq2 snakemake object

  

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  b60183a

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• fix samplesheet

  

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  6fe2e54

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Commits on Apr 10, 2024

• deseq2 symbol file

  

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  7771c4a

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• deseq2 salmon

  

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  4385081

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• deseq2 multicomp

  

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  1280216

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