replace regex as it evokes syntax warning

maxplanck-ie · Aug 8, 2024 · d42b681 · d42b681
1 parent 3f7b395
commit d42b681
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/snakePipes/shared/rules/createIndices.snakefile b/snakePipes/shared/rules/createIndices.snakefile
@@ -54,7 +54,7 @@ else:
         params:
             spikeinExt = spikeinExt
         shell: """
-            sed -r 's/\s+/{spikeinExt} /' {input} > {output}
+            sed -r 's/[[:space:]]+/{spikeinExt} /' {input} > {output}
         """
 
     rule createGenomeFasta: