fix

maxplanck-ie · Jan 7, 2025 · abf06c3 · abf06c3
1 parent 0a0b6bb
commit abf06c3
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/snakePipes/shared/rules/whatshap.snakefile b/snakePipes/shared/rules/whatshap.snakefile
@@ -2,8 +2,8 @@ rule whatshap_haplotag:
         input:
             ref = genome_fasta,
             pvcf = pvcf,
-            bam = filtered_bam/{sample}.filtered.bam,
-            bai = filtered_bam/{sample}.filtered.bam.bai
+            bam = "filtered_bam/{sample}.filtered.bam",
+            bai = "filtered_bam/{sample}.filtered.bam.bai"
         output:
             hbam = "allelic_bams/{sample}.filtered.allele_flagged.bam",
             hlist = "allelic_bams/{sample}.filtered_haplotype_list.tsv"