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maxplanck-ie · Jan 9, 2025 · 9489b88 · 9489b88
1 parent 95f1500
commit 9489b88
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/snakePipes/shared/rules/whatshap.snakefile b/snakePipes/shared/rules/whatshap.snakefile
@@ -38,8 +38,8 @@ def collect_split_bams(wildcards):
       checkpoint_output_a = checkpoints.whatshap_haplotag.get(**wildcards).output["hbam"]
       checkpoint_output_b = checkpoints.whatshap_split.get(**wildcards).output
       checkpoint_output = checkpoint_output_a + checkpoint_output_b
-      return ("allelic_bams/{sample}.{suffix}.sorted.bam",
-                  suffix=glob_wildcards("allelic_bams/{sample}.{suffix}.sorted.bam").suffix)
+      return expand("allelic_bams/{{sample}}.{suffix}.sorted.bam",
+                  suffix = glob_wildcards("allelic_bams/{sample}.{suffix}.sorted.bam").suffix)
 
 rule BAMindex_allelic:
     input: