test dag

maxplanck-ie · Apr 9, 2024 · 8cfe3ce · 8cfe3ce
1 parent 2ff14b4
commit 8cfe3ce
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/.ci_stuff/test_dag.sh b/.ci_stuff/test_dag.sh
@@ -339,7 +339,7 @@ if [ ${PIPESTATUS[0]} -ne 0 ] || [ $WC -ne 2539 ]; then exit 1 ; fi
 WC=`mRNA-seq -m allelic-mapping,deepTools_qc,alignment-free -i PE_input -o output --sampleSheet .ci_stuff/test_sampleSheet.tsv --snakemakeOptions " --dryrun --conda-prefix /tmp" --VCFfile allelic_input/file.vcf.gz --strains strain1 .ci_stuff/organism.yaml | tee >(cat 1>&2) | grep -v "conda installation\|Conda environment" | sed '/^\s*$/d' | wc -l`
 if [ ${PIPESTATUS[0]} -ne 0 ] || [ $WC -ne 3294 ]; then exit 1 ; fi
 WC=`mRNA-seq -m allelic-counting -i allelic_BAM_input/allelic_bams --fromBAM --bamExt '.sorted.bam' -o output --sampleSheet .ci_stuff/test_sampleSheet.tsv --snakemakeOptions " --dryrun --conda-prefix /tmp"  .ci_stuff/organism.yaml | tee >(cat 1>&2) | grep -v "conda installation\|Conda environment" | sed '/^\s*$/d' | wc -l`
-if [ ${PIPESTATUS[0]} -ne 0 ] || [ $WC -ne 1408 ]; then exit 1 ; fi
+if [ ${PIPESTATUS[0]} -ne 0 ] || [ $WC -ne 659 ]; then exit 1 ; fi