fix seacr control

maxplanck-ie · Apr 5, 2024 · 71e243f · 71e243f
1 parent 46af233
commit 71e243f
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Showing 2 changed files with 2 additions and 2 deletions.
diff --git a/snakePipes/shared/rules/ChIP_peak_calling.snakefile b/snakePipes/shared/rules/ChIP_peak_calling.snakefile
@@ -257,7 +257,7 @@ rule SEACR_peaks:
         "SEACR/{chip_sample}.filtered.stringent.bed"
     log: "SEACR/logs/{chip_sample}.log"
     params:
-        fdr = fdr,
+        fdr = lambda wildcards,input: fdr if not input.control else "",
         prefix = os.path.join(outdir,"SEACR/{chip_sample}.filtered"),
         script=os.path.join(maindir, "shared","tools/SEACR-1.3/SEACR_1.3.sh")
     conda: CONDA_SEACR_ENV

diff --git a/snakePipes/shared/rules/ChIP_peak_calling_spikein.snakefile b/snakePipes/shared/rules/ChIP_peak_calling_spikein.snakefile
@@ -257,7 +257,7 @@ rule SEACR_peaks:
         "SEACR/{chip_sample}_host.stringent.bed"
     log: "SEACR/logs/{chip_sample}.log"
     params:
-        fdr = fdr,
+        fdr = lambda wildcards,input: fdr if not input.control else "",
         prefix = os.path.join(outdir,"SEACR/{chip_sample}_host"),
         script=os.path.join(maindir, "shared","tools/SEACR-1.3/SEACR_1.3.sh")
     conda: CONDA_SEACR_ENV