fix wgbs

maxplanck-ie · Jan 13, 2025 · 68cfe7f · 68cfe7f
1 parent 6aa9fd6
commit 68cfe7f
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/snakePipes/shared/rules/WGBS.snakefile b/snakePipes/shared/rules/WGBS.snakefile
@@ -215,8 +215,8 @@ rule produceReport:
     input:
         bedGraphs=expand("MethylDackel/{sample}_CpG.bedGraph", sample=samples),
         Coverage=calc_doc(skipDOC),
-        ConversionRate=expand("QC_metrics/{sample}.conv.rate.txt", sample=samples),
-        mbiasTXT=expand("QC_metrics/{sample}.rrbs_summary_metrics", sample=samples),
+        ConversionRate=expand("QC_metrics/{sample}.rrbs_summary_metrics", sample=samples),
+        mbiasTXT=expand("QC_metrics/{sample}.Mbias.txt", sample=samples),
         fstat=expand("QC_metrics/{sample}.flagstat", sample=samples)
     output:
         QCrep='QC_metrics/QC_report.html'