plot_DAG everywhere

maxplanck-ie · Aug 12, 2024 · 5e18d4a · 5e18d4a
1 parent d3d1143
commit 5e18d4a
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Showing 10 changed files with 10 additions and 10 deletions.
diff --git a/snakePipes/workflows/ATACseq/ATACseq.py b/snakePipes/workflows/ATACseq/ATACseq.py
@@ -121,7 +121,7 @@ def main():
     cf.runAndCleanup(args, snakemake_cmd, logfile_name)
 
     #CreateDAG
-    cf.print_DAG(args,snakemake_cmd, __file__,defaults)
+    cf.plot_DAG(args, snakemake_cmd, __file__, defaults)
 
 
 if __name__ == "__main__":

diff --git a/snakePipes/workflows/ChIPseq/ChIPseq.py b/snakePipes/workflows/ChIPseq/ChIPseq.py
@@ -189,7 +189,7 @@ def main():
     cf.runAndCleanup(args, snakemake_cmd, logfile_name)
 
     #CreateDAG
-    cf.print_DAG(args,snakemake_cmd, __file__,defaults)
+    cf.plot_DAG(args, snakemake_cmd, __file__, defaults)
 
 
 if __name__ == "__main__":

diff --git a/snakePipes/workflows/DNAmapping/DNAmapping.py b/snakePipes/workflows/DNAmapping/DNAmapping.py
@@ -156,7 +156,7 @@ def main():
     cf.runAndCleanup(args, snakemake_cmd, logfile_name)
 
     #CreateDAG
-    cf.print_DAG(args,snakemake_cmd, __file__,defaults)
+    cf.plot_DAG(args, snakemake_cmd, __file__, defaults)
 
 
 if __name__ == "__main__":

diff --git a/snakePipes/workflows/HiC/HiC.py b/snakePipes/workflows/HiC/HiC.py
@@ -187,7 +187,7 @@ def main():
     cf.runAndCleanup(args, snakemake_cmd, logfile_name)
 
     # CreateDAG
-    cf.print_DAG(args, snakemake_cmd, __file__, defaults)
+    cf.plot_DAG(args, snakemake_cmd, __file__, defaults)
 
 
 if __name__ == "__main__":

diff --git a/snakePipes/workflows/WGBS/WGBS.py b/snakePipes/workflows/WGBS/WGBS.py
@@ -180,7 +180,7 @@ def main():
     cf.runAndCleanup(args, snakemake_cmd, logfile_name)
 
     #CreateDAG
-    cf.print_DAG(args,snakemake_cmd, __file__,defaults)
+    cf.plot_DAG(args, snakemake_cmd, __file__, defaults)
 
 
 if __name__ == "__main__":

diff --git a/snakePipes/workflows/createIndices/createIndices.py b/snakePipes/workflows/createIndices/createIndices.py
@@ -125,7 +125,7 @@ def main():
     cf.runAndCleanup(args, snakemake_cmd, logfile_name)
 
     #CreateDAG
-    cf.print_DAG(args,snakemake_cmd, __file__,defaults)
+    cf.plot_DAG(args, snakemake_cmd, __file__, defaults)
 
 
 if __name__ == "__main__":

diff --git a/snakePipes/workflows/mRNAseq/mRNAseq.py b/snakePipes/workflows/mRNAseq/mRNAseq.py
@@ -196,4 +196,4 @@ def main():
     cf.runAndCleanup(args, snakemake_cmd, logfile_name)
 
     #CreateDAG
-    cf.print_DAG(args,snakemake_cmd, __file__,defaults)
+    cf.plot_DAG(args, snakemake_cmd, __file__, defaults)
diff --git a/snakePipes/workflows/ncRNAseq/ncRNAseq.py b/snakePipes/workflows/ncRNAseq/ncRNAseq.py
@@ -121,7 +121,7 @@ def main():
     cf.runAndCleanup(args, snakemake_cmd, logfile_name)
 
     #CreateDAG
-    cf.print_DAG(args,snakemake_cmd, __file__,defaults)
+    cf.plot_DAG(args, snakemake_cmd, __file__, defaults)
 
 
 if __name__ == "__main__":

diff --git a/snakePipes/workflows/preprocessing/preprocessing.py b/snakePipes/workflows/preprocessing/preprocessing.py
@@ -137,7 +137,7 @@ def main():
     cf.runAndCleanup(args, snakemake_cmd, logfile_name)
 
     #CreateDAG
-    cf.print_DAG(args,snakemake_cmd, __file__,defaults)
+    cf.plot_DAG(args, snakemake_cmd, __file__, defaults)
 
 
 if __name__ == "__main__":

diff --git a/snakePipes/workflows/scRNAseq/scRNAseq.py b/snakePipes/workflows/scRNAseq/scRNAseq.py
@@ -150,7 +150,7 @@ def main():
     cf.runAndCleanup(args, snakemake_cmd, logfile_name)
 
     #CreateDAG
-    cf.print_DAG(args,snakemake_cmd, __file__,defaults)
+    cf.plot_DAG(args, snakemake_cmd, __file__, defaults)
 
 
 if __name__ == "__main__":