fix spikein renaming

maxplanck-ie · Jan 21, 2025 · 2de93f8 · 2de93f8
1 parent f5180fe
commit 2de93f8
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/snakePipes/shared/rules/createIndices.snakefile b/snakePipes/shared/rules/createIndices.snakefile
@@ -54,7 +54,7 @@ else:
         params:
             spikeinExt = spikeinExt
         shell: """
-            sed '/\s+/$/{spikeinExt} /' {input} > {output}
+            sed 's/\s\+/{params.spikeinExt} /' {input} > {output}
         """
 
     rule createGenomeFasta: