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test dag
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[email protected] committed Dec 20, 2024
1 parent 3d007ca commit 29f5096
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion .ci_stuff/test_dag.sh
Original file line number Diff line number Diff line change
Expand Up @@ -332,7 +332,7 @@ if [ ${PIPESTATUS[0]} -ne 0 ] || [ $WC -ne 1285 ]; then exit 1 ; fi
WC=`mRNAseq -m allelic-mapping,deepTools_qc -i PE_input -o output --sampleSheet .ci_stuff/test_sampleSheet.tsv --snakemakeOptions " --dryrun --conda-prefix /tmp" --VCFfile allelic_input/file.vcf.gz --strains strain1,strain2 .ci_stuff/organism.yaml | tee >(cat 1>&2) | grep -v -f .ci_stuff/test_ignore_patterns.txt | sed '/^\s*$/d' | sed '/^host:/d' | wc -l `
if [ ${PIPESTATUS[0]} -ne 0 ] || [ $WC -ne 2408 ]; then exit 1 ; fi
WC=`mRNAseq -m allelic-mapping,deepTools_qc -i PE_input -o output --sampleSheet .ci_stuff/test_sampleSheet.tsv --snakemakeOptions " --dryrun --conda-prefix /tmp" --SNPfile allelic_input/snpfile.txt --NMaskedIndex allelic_input/Ngenome .ci_stuff/organism.yaml | tee >(cat 1>&2) | grep -v -f .ci_stuff/test_ignore_patterns.txt | sed '/^\s*$/d' | sed '/^host:/d' | wc -l `
if [ ${PIPESTATUS[0]} -ne 0 ] || [ $WC -ne 2296 ]; then exit 1 ; fi
if [ ${PIPESTATUS[0]} -ne 0 ] || [ $WC -ne 2388 ]; then exit 1 ; fi
WC=`mRNAseq -m allelic-mapping,deepTools_qc -i PE_input -o output --sampleSheet .ci_stuff/test_sampleSheet.tsv --snakemakeOptions " --dryrun --conda-prefix /tmp" --VCFfile allelic_input/file.vcf.gz --strains strain1 .ci_stuff/organism.yaml | tee >(cat 1>&2) | grep -v -f .ci_stuff/test_ignore_patterns.txt | sed '/^\s*$/d' | sed '/^host:/d' | wc -l `
if [ ${PIPESTATUS[0]} -ne 0 ] || [ $WC -ne 2315 ]; then exit 1 ; fi
WC=`mRNAseq -m allelic-mapping,deepTools_qc,alignment-free -i PE_input -o output --sampleSheet .ci_stuff/test_sampleSheet.tsv --snakemakeOptions " --dryrun --conda-prefix /tmp" --VCFfile allelic_input/file.vcf.gz --strains strain1 .ci_stuff/organism.yaml | tee >(cat 1>&2) | grep -v -f .ci_stuff/test_ignore_patterns.txt | sed '/^\s*$/d' | sed '/^host:/d' | wc -l `
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