does this work

maxplanck-ie · Nov 15, 2023 · 176c5a6 · 176c5a6
1 parent 20345fc
commit 176c5a6
Showing 1 changed file with 3 additions and 1 deletion.
diff --git a/snakePipes/workflows/ChIP-seq/internals.snakefile b/snakePipes/workflows/ChIP-seq/internals.snakefile
@@ -120,7 +120,6 @@ for chip_sample, value in chip_dict.items():
     if 'broad' not in chip_dict[chip_sample] or not value['broad']:
         chip_dict[chip_sample]['broad'] = False
 
-warnings.warn( str(len(chip_samples_wo_ctrl)) + " out of " + str(len(chip_samples)) + " have no matching control ")
 
 control_samples = list(sorted(control_samples))
 # get a list of corresp control_names for chip samples
@@ -133,6 +132,9 @@ chip_samples_wo_ctrl = list(sorted(chip_samples_wo_ctrl))
 chip_samples = sorted(chip_samples_w_ctrl + chip_samples_wo_ctrl)
 all_samples = sorted(control_samples + chip_samples)
 
+
+warnings.warn( str(len(chip_samples_wo_ctrl)) + " out of " + str(len(chip_samples)) + " have no matching control ")
+
 if not fromBAM:
     if pairedEnd and not useSpikeInForNorm:
         if not os.path.isfile(os.path.join(workingdir, "deepTools_qc/bamPEFragmentSize/fragmentSize.metric.tsv")):